miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28078 3' -60.3 NC_005887.1 + 26495 0.68 0.287802
Target:  5'- -cCUGCUGcGCGCg-GGCGUuucccucgaucgCGCCGCg -3'
miRNA:   3'- gaGACGGCuCGCGagCCGCA------------GUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 7015 0.68 0.309715
Target:  5'- gCUCgugGCCGGcCGCcgCGGCG-CGCgGCa -3'
miRNA:   3'- -GAGa--CGGCUcGCGa-GCCGCaGUGgCG- -5'
28078 3' -60.3 NC_005887.1 + 9680 0.66 0.374239
Target:  5'- -gUUGCCGaAGCGCgcaCGcGCGaCACCGg -3'
miRNA:   3'- gaGACGGC-UCGCGa--GC-CGCaGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 27480 0.66 0.409748
Target:  5'- uUCUGCCGcgcgguGCGCgcuguugcugCGGUGUgCAcgcCCGCg -3'
miRNA:   3'- gAGACGGCu-----CGCGa---------GCCGCA-GU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 24539 0.69 0.235359
Target:  5'- --gUGCuCGAGCGaCUCGGCGaUCAgcccCUGCg -3'
miRNA:   3'- gagACG-GCUCGC-GAGCCGC-AGU----GGCG- -5'
28078 3' -60.3 NC_005887.1 + 13002 0.68 0.273882
Target:  5'- -gCUGCCGGGUuCUCcGCG-UACCGCu -3'
miRNA:   3'- gaGACGGCUCGcGAGcCGCaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 1539 0.67 0.325017
Target:  5'- cCUCgucaucGUCGAGCGg-C-GCGUCGCCGCc -3'
miRNA:   3'- -GAGa-----CGGCUCGCgaGcCGCAGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 36936 0.66 0.409748
Target:  5'- ---cGCCGGuCGCUgCGGCGcCGCCcGCc -3'
miRNA:   3'- gagaCGGCUcGCGA-GCCGCaGUGG-CG- -5'
28078 3' -60.3 NC_005887.1 + 16388 0.68 0.273882
Target:  5'- --gUGUCGaAGaUGCUCGGCGUCuGCCGg -3'
miRNA:   3'- gagACGGC-UC-GCGAGCCGCAG-UGGCg -5'
28078 3' -60.3 NC_005887.1 + 25047 0.66 0.418948
Target:  5'- ---cGCgGuGCGCcgaacCGGCGUUugCGCg -3'
miRNA:   3'- gagaCGgCuCGCGa----GCCGCAGugGCG- -5'
28078 3' -60.3 NC_005887.1 + 17467 0.67 0.325017
Target:  5'- ---aGaCCGAGCGCgCGGCaUCgGCCGCc -3'
miRNA:   3'- gagaC-GGCUCGCGaGCCGcAG-UGGCG- -5'
28078 3' -60.3 NC_005887.1 + 33412 0.68 0.280773
Target:  5'- aUCgUGUCG-GCGCUCuGCGUCG-CGCg -3'
miRNA:   3'- gAG-ACGGCuCGCGAGcCGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 25887 0.67 0.357283
Target:  5'- -cCUGCCGcGCGgUCGaGCG-CAugcCCGCg -3'
miRNA:   3'- gaGACGGCuCGCgAGC-CGCaGU---GGCG- -5'
28078 3' -60.3 NC_005887.1 + 26086 0.66 0.369095
Target:  5'- aUCUGCUGcaucaGCUCGGCGacggugcccgugcgcUCGCCGg -3'
miRNA:   3'- gAGACGGCucg--CGAGCCGC---------------AGUGGCg -5'
28078 3' -60.3 NC_005887.1 + 39318 0.66 0.390845
Target:  5'- gUCauugGCCGAGCaugGCUuugcccgCGGCGcUgGCCGCa -3'
miRNA:   3'- gAGa---CGGCUCG---CGA-------GCCGC-AgUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 6890 0.66 0.409748
Target:  5'- -cCUGCuCGAcaacgaacGC-CUCGGCGUCAUcuaCGCg -3'
miRNA:   3'- gaGACG-GCU--------CGcGAGCCGCAGUG---GCG- -5'
28078 3' -60.3 NC_005887.1 + 33899 0.71 0.191175
Target:  5'- ---cGCCGGGCGCUCGaucGCGUUGaCGCg -3'
miRNA:   3'- gagaCGGCUCGCGAGC---CGCAGUgGCG- -5'
28078 3' -60.3 NC_005887.1 + 37766 0.7 0.217861
Target:  5'- aUCUGCgCGGccuGCGcCUCGGCGgcuugCugCGCc -3'
miRNA:   3'- gAGACG-GCU---CGC-GAGCCGCa----GugGCG- -5'
28078 3' -60.3 NC_005887.1 + 19522 0.69 0.247669
Target:  5'- aUCUGCCgguuGAGCacGUUCGGaugCGCCGCg -3'
miRNA:   3'- gAGACGG----CUCG--CGAGCCgcaGUGGCG- -5'
28078 3' -60.3 NC_005887.1 + 1803 0.69 0.267127
Target:  5'- aCUCgUGCgCGAGCGCcagacCGuCGUCGCUGCc -3'
miRNA:   3'- -GAG-ACG-GCUCGCGa----GCcGCAGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.