miRNA display CGI


Results 1 - 20 of 216 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28090 5' -57.5 NC_005887.1 + 19454 0.66 0.555081
Target:  5'- gCGCCUGAUAGauGCGCCaccagCGCgcgaggaucugauaGCGGCc -3'
miRNA:   3'- -GCGGAUUGUUggCGCGG-----GCGa-------------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 11345 0.66 0.550774
Target:  5'- gGCCUGc--GCCGCGCCaCGCgagagAC-GCa -3'
miRNA:   3'- gCGGAUuguUGGCGCGG-GCGa----UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 28199 0.66 0.550774
Target:  5'- gCGCC--GCAucaGCGCCgCGCgucuCGGCg -3'
miRNA:   3'- -GCGGauUGUuggCGCGG-GCGau--GCCG- -5'
28090 5' -57.5 NC_005887.1 + 40854 0.66 0.550774
Target:  5'- -uCCgcACGGCCGCGCCgCGCgagcGCcGCa -3'
miRNA:   3'- gcGGauUGUUGGCGCGG-GCGa---UGcCG- -5'
28090 5' -57.5 NC_005887.1 + 9031 0.66 0.550774
Target:  5'- aGCCcgUGACGuuuguCgGCgGCCCGUUcGCGGCc -3'
miRNA:   3'- gCGG--AUUGUu----GgCG-CGGGCGA-UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 41274 0.66 0.550774
Target:  5'- gCGCCgu-CGACCugcgcacggGCGCgCUGCUGCcgccgGGCa -3'
miRNA:   3'- -GCGGauuGUUGG---------CGCG-GGCGAUG-----CCG- -5'
28090 5' -57.5 NC_005887.1 + 8538 0.66 0.549699
Target:  5'- cCGaCCUGACAcCCGCGUgguggccguggguCCGCgcuUGGUg -3'
miRNA:   3'- -GC-GGAUUGUuGGCGCG-------------GGCGau-GCCG- -5'
28090 5' -57.5 NC_005887.1 + 17282 0.66 0.548625
Target:  5'- aCGUCgGGCGgcGCCGCGCgCGCaaacgccgguuCGGCg -3'
miRNA:   3'- -GCGGaUUGU--UGGCGCGgGCGau---------GCCG- -5'
28090 5' -57.5 NC_005887.1 + 30950 0.66 0.540054
Target:  5'- uGCCuUGGCGgcGCCGgcCGCCagCGCUcCGGCu -3'
miRNA:   3'- gCGG-AUUGU--UGGC--GCGG--GCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 5913 0.66 0.540054
Target:  5'- gGCCgaagGGCAagaaGCCG-GCCgCGCggaagGCGGUg -3'
miRNA:   3'- gCGGa---UUGU----UGGCgCGG-GCGa----UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 25391 0.66 0.540054
Target:  5'- uCGCC-GAC-AUUGcCGCCCGC-GCGGUu -3'
miRNA:   3'- -GCGGaUUGuUGGC-GCGGGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 40354 0.66 0.540054
Target:  5'- gGCCgucgagcGCGGCCGUGCC-GCUcgucGCGcGCg -3'
miRNA:   3'- gCGGau-----UGUUGGCGCGGgCGA----UGC-CG- -5'
28090 5' -57.5 NC_005887.1 + 10788 0.66 0.540054
Target:  5'- gGUCgaguggGACGACUGCGCgC-CUACGGa -3'
miRNA:   3'- gCGGa-----UUGUUGGCGCGgGcGAUGCCg -5'
28090 5' -57.5 NC_005887.1 + 34360 0.66 0.540054
Target:  5'- gGCUggaGACGAgCGC-CCCGCguaucagagUGCGGCc -3'
miRNA:   3'- gCGGa--UUGUUgGCGcGGGCG---------AUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4792 0.66 0.540054
Target:  5'- aGCCggcgaGGCCGUGCUCGCggaucuCGcGCa -3'
miRNA:   3'- gCGGauug-UUGGCGCGGGCGau----GC-CG- -5'
28090 5' -57.5 NC_005887.1 + 40947 0.66 0.540054
Target:  5'- aCGCCgagcGCAugCuCGaCCGCUuCGGCg -3'
miRNA:   3'- -GCGGau--UGUugGcGCgGGCGAuGCCG- -5'
28090 5' -57.5 NC_005887.1 + 29716 0.66 0.536851
Target:  5'- uCGCCgucGCGucgcaggaucacgcGCCGCGCgUGC-ACGGUc -3'
miRNA:   3'- -GCGGau-UGU--------------UGGCGCGgGCGaUGCCG- -5'
28090 5' -57.5 NC_005887.1 + 4207 0.66 0.533655
Target:  5'- gGCCUGAUGuccggcauuuucaucGCCGCGguuguuuuCCUGCUcgcgauggagcACGGCa -3'
miRNA:   3'- gCGGAUUGU---------------UGGCGC--------GGGCGA-----------UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 9733 0.66 0.529405
Target:  5'- aCGCCcGGCAGCUGaacaaGCuuGCguggAUGGUg -3'
miRNA:   3'- -GCGGaUUGUUGGCg----CGggCGa---UGCCG- -5'
28090 5' -57.5 NC_005887.1 + 2350 0.66 0.529405
Target:  5'- gGCg-GGCGACCaGCGCUCGCa--GGCc -3'
miRNA:   3'- gCGgaUUGUUGG-CGCGGGCGaugCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.