miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28096 3' -59.7 NC_005887.1 + 24604 0.65 0.425842
Target:  5'- cGCGGCGaugaucuUGCgGCCGCACGC-GUGGuCGa -3'
miRNA:   3'- -CGUCGC-------GCG-UGGCGUGCGaCAUCcGC- -5'
28096 3' -59.7 NC_005887.1 + 35297 0.65 0.425842
Target:  5'- aGCAGCGCuucggccuucucuGCaucgcuccacuGCCGCGCGCcgc-GGCGg -3'
miRNA:   3'- -CGUCGCG-------------CG-----------UGGCGUGCGacauCCGC- -5'
28096 3' -59.7 NC_005887.1 + 32797 0.66 0.417375
Target:  5'- uCGGCGCGCGCCGCuucac--GGGCa -3'
miRNA:   3'- cGUCGCGCGUGGCGugcgacaUCCGc -5'
28096 3' -59.7 NC_005887.1 + 15605 0.66 0.417375
Target:  5'- cGCAGCGCacggGCGUCGCGCaGC---AGGCGg -3'
miRNA:   3'- -CGUCGCG----CGUGGCGUG-CGacaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28804 0.66 0.417375
Target:  5'- gGCGGCaGCGCAUCGCcgaucgcauuCGCgaucGUGGcGCGc -3'
miRNA:   3'- -CGUCG-CGCGUGGCGu---------GCGa---CAUC-CGC- -5'
28096 3' -59.7 NC_005887.1 + 26244 0.66 0.414576
Target:  5'- cGCAGCGC-CACCGgaaaGCGUuucaccaccggccaUGUGcGGCGc -3'
miRNA:   3'- -CGUCGCGcGUGGCg---UGCG--------------ACAU-CCGC- -5'
28096 3' -59.7 NC_005887.1 + 7936 0.66 0.411788
Target:  5'- -uGGCGuCGCaagucggaaucuguaACCGCGCGCUGacgaagaucGGCGa -3'
miRNA:   3'- cgUCGC-GCG---------------UGGCGUGCGACau-------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 17498 0.66 0.411788
Target:  5'- aCGGcCGUGCAUgauggcacggaaaugCGCACGCUcGaGGGCGg -3'
miRNA:   3'- cGUC-GCGCGUG---------------GCGUGCGA-CaUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 39144 0.66 0.408089
Target:  5'- uGCgAGCGCuCGCgGCccuucuCGCUGUccGGGCGc -3'
miRNA:   3'- -CG-UCGCGcGUGgCGu-----GCGACA--UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 42042 0.66 0.408089
Target:  5'- uGUAcGCGCGCACCGCGgccuCGCUGa----- -3'
miRNA:   3'- -CGU-CGCGCGUGGCGU----GCGACauccgc -5'
28096 3' -59.7 NC_005887.1 + 4204 0.66 0.408089
Target:  5'- -aAGUGCuGCAgCGCGCGCaGgagaaAGGCGu -3'
miRNA:   3'- cgUCGCG-CGUgGCGUGCGaCa----UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 3526 0.66 0.407168
Target:  5'- -gAGCGguagucauggcuuUGUGCUGCGCGUUGUcGGCGa -3'
miRNA:   3'- cgUCGC-------------GCGUGGCGUGCGACAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 28057 0.66 0.406248
Target:  5'- aGCAG-GCGCugCGCcacccauguucggucACGCUGcaugccguuuaccgGGGCGu -3'
miRNA:   3'- -CGUCgCGCGugGCG---------------UGCGACa-------------UCCGC- -5'
28096 3' -59.7 NC_005887.1 + 18022 0.66 0.398934
Target:  5'- cGCcGCGCGCuuaCGCGCGCcggacUGacggccgacgauUGGGCGa -3'
miRNA:   3'- -CGuCGCGCGug-GCGUGCG-----AC------------AUCCGC- -5'
28096 3' -59.7 NC_005887.1 + 32743 0.66 0.398934
Target:  5'- cGCGGCGCuCGCgUGCGCGCcGgcGcGCGc -3'
miRNA:   3'- -CGUCGCGcGUG-GCGUGCGaCauC-CGC- -5'
28096 3' -59.7 NC_005887.1 + 41640 0.66 0.398934
Target:  5'- uGCuGCgucuGCGCGgCGCACGCUucgucuacGUuGGCGa -3'
miRNA:   3'- -CGuCG----CGCGUgGCGUGCGA--------CAuCCGC- -5'
28096 3' -59.7 NC_005887.1 + 26746 0.66 0.395309
Target:  5'- uGCuGCGCGaCGcCCGUGCGCUGcgucucagcuucGGCGa -3'
miRNA:   3'- -CGuCGCGC-GU-GGCGUGCGACau----------CCGC- -5'
28096 3' -59.7 NC_005887.1 + 27655 0.66 0.389911
Target:  5'- --uGCGCGCugagcuGCCGCGCGCgc--GGCu -3'
miRNA:   3'- cguCGCGCG------UGGCGUGCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 30808 0.66 0.389911
Target:  5'- -uGGCGCGCACCGCG-GCcuc-GGCc -3'
miRNA:   3'- cgUCGCGCGUGGCGUgCGacauCCGc -5'
28096 3' -59.7 NC_005887.1 + 11724 0.66 0.389911
Target:  5'- cGCcGCGCGCACgGCGCGCacgaauGCa -3'
miRNA:   3'- -CGuCGCGCGUGgCGUGCGacauc-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.