miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28097 5' -59 NC_005887.1 + 39068 0.65 0.417431
Target:  5'- cGCCGGCgugaucauggaaucCAucGCGGCgacgaaguugcgcAGCGCGAGCGg- -3'
miRNA:   3'- aCGGCCG--------------GU--CGCCG-------------UCGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 3338 0.66 0.411726
Target:  5'- aGCC-GCCGucgacugcGCGGUGGCACGaAACAa- -3'
miRNA:   3'- aCGGcCGGU--------CGCCGUCGUGC-UUGUau -5'
28097 5' -59 NC_005887.1 + 34009 0.66 0.411726
Target:  5'- gGCC-GCCAGaCGGCA-CGCGAAUg-- -3'
miRNA:   3'- aCGGcCGGUC-GCCGUcGUGCUUGuau -5'
28097 5' -59 NC_005887.1 + 26668 0.66 0.411726
Target:  5'- -uCCGGCCGcGCGGCGGUgagcugguCGAGCu-- -3'
miRNA:   3'- acGGCCGGU-CGCCGUCGu-------GCUUGuau -5'
28097 5' -59 NC_005887.1 + 13163 0.66 0.411726
Target:  5'- uUGCCGcGCgcgcgcagaCAGCGGgAGCGguCGAGCAg- -3'
miRNA:   3'- -ACGGC-CG---------GUCGCCgUCGU--GCUUGUau -5'
28097 5' -59 NC_005887.1 + 17270 0.66 0.402324
Target:  5'- gUGCCGGgCgagacgucgGGCGGCGccGCGCGcGCAa- -3'
miRNA:   3'- -ACGGCCgG---------UCGCCGU--CGUGCuUGUau -5'
28097 5' -59 NC_005887.1 + 22952 0.66 0.402324
Target:  5'- cG-CGGaCCGauacgcucuGCGGCAGCugcGCGAGCAUGg -3'
miRNA:   3'- aCgGCC-GGU---------CGCCGUCG---UGCUUGUAU- -5'
28097 5' -59 NC_005887.1 + 21587 0.66 0.402324
Target:  5'- cUGCCGGCaucGuCGGCAcgacCACGAACGa- -3'
miRNA:   3'- -ACGGCCGgu-C-GCCGUc---GUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 31689 0.66 0.402324
Target:  5'- gGCCGGCUGGUucgucGGCAGaaccuCGGACGc- -3'
miRNA:   3'- aCGGCCGGUCG-----CCGUCgu---GCUUGUau -5'
28097 5' -59 NC_005887.1 + 38642 0.66 0.402324
Target:  5'- cG-CGGUCGGCGcGCGGCuCGAcgGCGUGg -3'
miRNA:   3'- aCgGCCGGUCGC-CGUCGuGCU--UGUAU- -5'
28097 5' -59 NC_005887.1 + 5928 0.66 0.402324
Target:  5'- aGCCGGCCGcGCggaaGGCGGUGCGcaaAUGa -3'
miRNA:   3'- aCGGCCGGU-CG----CCGUCGUGCuugUAU- -5'
28097 5' -59 NC_005887.1 + 951 0.66 0.393061
Target:  5'- gUGCuuCGGCgaaGGCGuGCAGCACGAGg--- -3'
miRNA:   3'- -ACG--GCCGg--UCGC-CGUCGUGCUUguau -5'
28097 5' -59 NC_005887.1 + 18546 0.66 0.383936
Target:  5'- -cUCGGUgGGCGGCGGCgccggcuucGCGGGCGa- -3'
miRNA:   3'- acGGCCGgUCGCCGUCG---------UGCUUGUau -5'
28097 5' -59 NC_005887.1 + 23938 0.66 0.383936
Target:  5'- cGUCGGCCucGCGGCGucugcGCACGcaccGACGa- -3'
miRNA:   3'- aCGGCCGGu-CGCCGU-----CGUGC----UUGUau -5'
28097 5' -59 NC_005887.1 + 1411 0.66 0.383936
Target:  5'- cGCuCGG-CAGCGGCAagACGAACGc- -3'
miRNA:   3'- aCG-GCCgGUCGCCGUcgUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 17150 0.66 0.383032
Target:  5'- gUGCUGGUCGGCgaagaucgcgaGGCGugggagcGCGCGAACGc- -3'
miRNA:   3'- -ACGGCCGGUCG-----------CCGU-------CGUGCUUGUau -5'
28097 5' -59 NC_005887.1 + 5524 0.66 0.374954
Target:  5'- -aCCGGCCgcAGCaGGCAcGCACGAuucugcgcccACGUGg -3'
miRNA:   3'- acGGCCGG--UCG-CCGU-CGUGCU----------UGUAU- -5'
28097 5' -59 NC_005887.1 + 2573 0.66 0.374954
Target:  5'- cGCaUGGCCgugAGCGGCgAGCgguacGCGGACAa- -3'
miRNA:   3'- aCG-GCCGG---UCGCCG-UCG-----UGCUUGUau -5'
28097 5' -59 NC_005887.1 + 3803 0.66 0.374954
Target:  5'- -aCCGGCCAGUGGCGcccGCugGugUAa- -3'
miRNA:   3'- acGGCCGGUCGCCGU---CGugCuuGUau -5'
28097 5' -59 NC_005887.1 + 40781 0.66 0.374954
Target:  5'- cGCCGaGCCGGCGGUcgagguucguGGCgGCGAcGCGc- -3'
miRNA:   3'- aCGGC-CGGUCGCCG----------UCG-UGCU-UGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.