miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28101 3' -56.1 NC_005887.1 + 15818 0.66 0.647294
Target:  5'- aCCACgagGCGcagguGCAGCGCUUGcgcggcgCGAUCgAGg -3'
miRNA:   3'- -GGUG---CGC-----UGUCGCGAGCa------GCUAGgUC- -5'
28101 3' -56.1 NC_005887.1 + 33008 0.66 0.647294
Target:  5'- -uGCGCGACA-CGCUgcCGUCGAUaaucaaCAGc -3'
miRNA:   3'- ggUGCGCUGUcGCGA--GCAGCUAg-----GUC- -5'
28101 3' -56.1 NC_005887.1 + 41823 0.66 0.647294
Target:  5'- gCGCGCGGCGgccgacGCGUUCaGaUCGA-CCAGa -3'
miRNA:   3'- gGUGCGCUGU------CGCGAG-C-AGCUaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 26438 0.66 0.647294
Target:  5'- cCCGCGCGGaa-CGCagGUCGG-CCAGc -3'
miRNA:   3'- -GGUGCGCUgucGCGagCAGCUaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 13371 0.66 0.636285
Target:  5'- cCCG-GCGAUGGCGCUCG-CGcugaaggCCGGc -3'
miRNA:   3'- -GGUgCGCUGUCGCGAGCaGCua-----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 31505 0.66 0.636285
Target:  5'- gCCGCGCGcGCGGCGCggaugaacgcagUUGUCGcuucgCCAu -3'
miRNA:   3'- -GGUGCGC-UGUCGCG------------AGCAGCua---GGUc -5'
28101 3' -56.1 NC_005887.1 + 1443 0.66 0.636285
Target:  5'- gCGCGCGGuagcccuuCGGCgGCUCGUCGucaCCGu -3'
miRNA:   3'- gGUGCGCU--------GUCG-CGAGCAGCua-GGUc -5'
28101 3' -56.1 NC_005887.1 + 22431 0.66 0.63188
Target:  5'- aCCGgGCGGCAGCGUcaggGUCGAauagagguagacgCCGGg -3'
miRNA:   3'- -GGUgCGCUGUCGCGag--CAGCUa------------GGUC- -5'
28101 3' -56.1 NC_005887.1 + 15627 0.66 0.625273
Target:  5'- gCAgGCGGCcGgGCUCGcCGAUCaGGg -3'
miRNA:   3'- gGUgCGCUGuCgCGAGCaGCUAGgUC- -5'
28101 3' -56.1 NC_005887.1 + 25660 0.66 0.624172
Target:  5'- aCCGCcaGCcGCAGCGCgucgccaUCGUCGGUCa-- -3'
miRNA:   3'- -GGUG--CGcUGUCGCG-------AGCAGCUAGguc -5'
28101 3' -56.1 NC_005887.1 + 32341 0.66 0.614267
Target:  5'- gCCGCGCGugAuGUGgUCGgCGAUCUu- -3'
miRNA:   3'- -GGUGCGCugU-CGCgAGCaGCUAGGuc -5'
28101 3' -56.1 NC_005887.1 + 19565 0.66 0.614267
Target:  5'- aCAacaGCGGCcGCGCcggCGUCGAgCCAa -3'
miRNA:   3'- gGUg--CGCUGuCGCGa--GCAGCUaGGUc -5'
28101 3' -56.1 NC_005887.1 + 33646 0.66 0.614267
Target:  5'- gCGCGCG-CuGCGCUCGgcgaggguuucaUUGAUCuCGGg -3'
miRNA:   3'- gGUGCGCuGuCGCGAGC------------AGCUAG-GUC- -5'
28101 3' -56.1 NC_005887.1 + 1496 0.66 0.603276
Target:  5'- gCGCGCGGCGGCuucGC-CGgUgGAUCCGa -3'
miRNA:   3'- gGUGCGCUGUCG---CGaGC-AgCUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 2520 0.66 0.603276
Target:  5'- --gUGCGACGGCgGCcCGUCGcgcuuuAUCCAGc -3'
miRNA:   3'- gguGCGCUGUCG-CGaGCAGC------UAGGUC- -5'
28101 3' -56.1 NC_005887.1 + 17409 0.66 0.599984
Target:  5'- aUCACgucgGCGGCAuggcgaagaacaucGCGCUCGUCGAgcgCUAc -3'
miRNA:   3'- -GGUG----CGCUGU--------------CGCGAGCAGCUa--GGUc -5'
28101 3' -56.1 NC_005887.1 + 41514 0.67 0.59231
Target:  5'- gCAaGuCGACGGUGCUCGgcaaGAUCCGc -3'
miRNA:   3'- gGUgC-GCUGUCGCGAGCag--CUAGGUc -5'
28101 3' -56.1 NC_005887.1 + 31277 0.67 0.59231
Target:  5'- gCCGCGuCGAUcGC-CUCGUCGAgcucgaCCGGc -3'
miRNA:   3'- -GGUGC-GCUGuCGcGAGCAGCUa-----GGUC- -5'
28101 3' -56.1 NC_005887.1 + 544 0.67 0.59231
Target:  5'- gCCGCGCGccgcgccggauACAGCGCgaagacCGcCGG-CCAGa -3'
miRNA:   3'- -GGUGCGC-----------UGUCGCGa-----GCaGCUaGGUC- -5'
28101 3' -56.1 NC_005887.1 + 30616 0.67 0.581378
Target:  5'- aCuCGCG-CAGCGCgucCGgcaGAUCCGGa -3'
miRNA:   3'- gGuGCGCuGUCGCGa--GCag-CUAGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.