miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28102 3' -47.9 NC_005887.1 + 34944 0.66 0.967669
Target:  5'- cGGCGgGUGCGAccgUgGCGAUcgucGUCGg -3'
miRNA:   3'- -UCGCgCGCGCUua-AgCGUUAuu--UAGC- -5'
28102 3' -47.9 NC_005887.1 + 30367 0.66 0.967669
Target:  5'- cGUGgGCGCGAccugccGUUCGUAGacagGGAUCc -3'
miRNA:   3'- uCGCgCGCGCU------UAAGCGUUa---UUUAGc -5'
28102 3' -47.9 NC_005887.1 + 26435 0.66 0.963959
Target:  5'- cGGCcCGCGCGGAa-CGCAG---GUCGg -3'
miRNA:   3'- -UCGcGCGCGCUUaaGCGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 11112 0.66 0.963183
Target:  5'- uGGUGCGCGCGAAgcuggccgaggCGCcGUGg--CGg -3'
miRNA:   3'- -UCGCGCGCGCUUaa---------GCGuUAUuuaGC- -5'
28102 3' -47.9 NC_005887.1 + 37449 0.66 0.959962
Target:  5'- cGGCGCuugccuGCGCGG-UUUGCAGUGcgccggaugcGAUCa -3'
miRNA:   3'- -UCGCG------CGCGCUuAAGCGUUAU----------UUAGc -5'
28102 3' -47.9 NC_005887.1 + 35153 0.66 0.959962
Target:  5'- uGCGCaCGCGAgaAUUCGagaAGcGAGUCGa -3'
miRNA:   3'- uCGCGcGCGCU--UAAGCg--UUaUUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 36277 0.66 0.959962
Target:  5'- cAGCGCGCGCaucUUCGUuGGUGAGUg- -3'
miRNA:   3'- -UCGCGCGCGcuuAAGCG-UUAUUUAgc -5'
28102 3' -47.9 NC_005887.1 + 38152 0.66 0.958706
Target:  5'- uGCGCGCGCugcagcacuucggUCGCGGUcauGUCGc -3'
miRNA:   3'- uCGCGCGCGcuua---------AGCGUUAuu-UAGC- -5'
28102 3' -47.9 NC_005887.1 + 38419 0.66 0.95567
Target:  5'- uGCGCGcCGCGGAUguuggucuUCGCcAU--GUCGu -3'
miRNA:   3'- uCGCGC-GCGCUUA--------AGCGuUAuuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 38648 0.66 0.95567
Target:  5'- cGGCGCGCGgcuCGAcggCGUggUAgaaGAUCGc -3'
miRNA:   3'- -UCGCGCGC---GCUuaaGCGuuAU---UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 37400 0.67 0.951075
Target:  5'- uGGCGCuGCGCGG--UCGCGAc------ -3'
miRNA:   3'- -UCGCG-CGCGCUuaAGCGUUauuuagc -5'
28102 3' -47.9 NC_005887.1 + 6089 0.67 0.951075
Target:  5'- cGCGCGCuGCGAAgcUGUAcgAcaAAUCGu -3'
miRNA:   3'- uCGCGCG-CGCUUaaGCGUuaU--UUAGC- -5'
28102 3' -47.9 NC_005887.1 + 1440 0.67 0.951075
Target:  5'- uGCGCGCGCGGuagcccUUCgGCGGcucGUCGu -3'
miRNA:   3'- uCGCGCGCGCUu-----AAG-CGUUauuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 26805 0.67 0.951075
Target:  5'- cGCGCGCGCcGAGUcgUCGCccGUGA--CGa -3'
miRNA:   3'- uCGCGCGCG-CUUA--AGCGu-UAUUuaGC- -5'
28102 3' -47.9 NC_005887.1 + 40379 0.67 0.946173
Target:  5'- cGuCGCGCGCGAGgaaaUCGUGAUGcc-CGg -3'
miRNA:   3'- uC-GCGCGCGCUUa---AGCGUUAUuuaGC- -5'
28102 3' -47.9 NC_005887.1 + 27970 0.67 0.946172
Target:  5'- cGCGCGCGCGccga-GCGGcGAcUCGa -3'
miRNA:   3'- uCGCGCGCGCuuaagCGUUaUUuAGC- -5'
28102 3' -47.9 NC_005887.1 + 13823 0.67 0.946172
Target:  5'- cGGCGCGCGUGAGcgUGCc-UGAccgcAUCGu -3'
miRNA:   3'- -UCGCGCGCGCUUaaGCGuuAUU----UAGC- -5'
28102 3' -47.9 NC_005887.1 + 5919 0.67 0.940957
Target:  5'- aGGCGaUGCGCaAGUUCGguGU--GUCGg -3'
miRNA:   3'- -UCGC-GCGCGcUUAAGCguUAuuUAGC- -5'
28102 3' -47.9 NC_005887.1 + 24895 0.67 0.940957
Target:  5'- cGCGCGCuCGGucuucUUCGCAGcagccGGAUCGg -3'
miRNA:   3'- uCGCGCGcGCUu----AAGCGUUa----UUUAGC- -5'
28102 3' -47.9 NC_005887.1 + 37113 0.67 0.940957
Target:  5'- cGGCGauCGCGCGGccgUCGCccgGAAUCu -3'
miRNA:   3'- -UCGC--GCGCGCUua-AGCGuuaUUUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.