miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 31272 0.66 0.426139
Target:  5'- cGUCGGCCGCGUCGauCGCcucgucgagcucgacCGGCaucgGCGCa -3'
miRNA:   3'- -CGGCUGGUGUAGU--GCGc--------------GCCGg---CGCG- -5'
28125 5' -60.4 NC_005887.1 + 31287 0.66 0.42521
Target:  5'- uUCGAUCGCGUCGUGCugaagcacGCGGCgcccgaaaucuaCGCGCg -3'
miRNA:   3'- cGGCUGGUGUAGUGCG--------CGCCG------------GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 18985 0.66 0.42521
Target:  5'- -gCGGCaGCAUgGCGCaGUcuaaccaaaGGCCGCGCc -3'
miRNA:   3'- cgGCUGgUGUAgUGCG-CG---------CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 16406 0.66 0.42521
Target:  5'- cGCCGGCCGgAagcUCACGCa-GGCCGa-- -3'
miRNA:   3'- -CGGCUGGUgU---AGUGCGcgCCGGCgcg -5'
28125 5' -60.4 NC_005887.1 + 5465 0.66 0.42521
Target:  5'- cGCCGcCCGCcgguUCAC---CGGUCGCGCu -3'
miRNA:   3'- -CGGCuGGUGu---AGUGcgcGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 26494 0.66 0.421504
Target:  5'- uGCCGGCCGCuuccUCGacgauuuccucgaGCGCcugcaguuucaGGUCGUGCa -3'
miRNA:   3'- -CGGCUGGUGu---AGUg------------CGCG-----------CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 36967 0.66 0.415983
Target:  5'- cGUCGucuCgGCGUCGCGCG-GGUCGaGCu -3'
miRNA:   3'- -CGGCu--GgUGUAGUGCGCgCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 13730 0.66 0.415983
Target:  5'- aGCCGA--ACAUCGuCGCGaugccguaCGGCUgGCGCg -3'
miRNA:   3'- -CGGCUggUGUAGU-GCGC--------GCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 24619 0.66 0.415983
Target:  5'- -gCGGCCGC---ACGCGUGGUCGaacaGCu -3'
miRNA:   3'- cgGCUGGUGuagUGCGCGCCGGCg---CG- -5'
28125 5' -60.4 NC_005887.1 + 3092 0.66 0.415983
Target:  5'- gGCCGAgCAUGgcuuugccCGCgGCGCuGGCCGCagGCg -3'
miRNA:   3'- -CGGCUgGUGUa-------GUG-CGCG-CCGGCG--CG- -5'
28125 5' -60.4 NC_005887.1 + 14427 0.66 0.415983
Target:  5'- aGCCgGACC-CGaCGCGCGCaaCCGCGa -3'
miRNA:   3'- -CGG-CUGGuGUaGUGCGCGccGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 30985 0.66 0.415983
Target:  5'- cGCCcACUguucgggguGCGUCucuCGCGUGGCgCgGCGCa -3'
miRNA:   3'- -CGGcUGG---------UGUAGu--GCGCGCCG-G-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 2905 0.66 0.415983
Target:  5'- cGUCGGCCGCcgCgaACGaCGCcGCCGCcaaGCu -3'
miRNA:   3'- -CGGCUGGUGuaG--UGC-GCGcCGGCG---CG- -5'
28125 5' -60.4 NC_005887.1 + 30809 0.66 0.415983
Target:  5'- aGCUGACCGacggcgaaGUCGCGaa-GGCCaCGCa -3'
miRNA:   3'- -CGGCUGGUg-------UAGUGCgcgCCGGcGCG- -5'
28125 5' -60.4 NC_005887.1 + 21390 0.66 0.415983
Target:  5'- aCCGGCCGaugcgGUCG-GCGCGGUgggCGUGCc -3'
miRNA:   3'- cGGCUGGUg----UAGUgCGCGCCG---GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 5826 0.66 0.406879
Target:  5'- aGUCGGCgCGgGUCGCGaagggcgaaGCGGagcucaCCGCGCu -3'
miRNA:   3'- -CGGCUG-GUgUAGUGCg--------CGCC------GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 24187 0.66 0.406879
Target:  5'- aGCCGcCCACAgCGuCGUGuuGCCGaCGUg -3'
miRNA:   3'- -CGGCuGGUGUaGU-GCGCgcCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 34634 0.66 0.406879
Target:  5'- cGCCGuuCGCGUCgACGagGCGcGCCG-GCu -3'
miRNA:   3'- -CGGCugGUGUAG-UGCg-CGC-CGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 21299 0.66 0.406879
Target:  5'- cGUCGcCCACAuUCACGgGCacgcccaCCGCGCc -3'
miRNA:   3'- -CGGCuGGUGU-AGUGCgCGcc-----GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 25728 0.66 0.406879
Target:  5'- -aCGAUgGCGaCGCGCuGCGGCUG-GCg -3'
miRNA:   3'- cgGCUGgUGUaGUGCG-CGCCGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.