miRNA display CGI


Results 1 - 20 of 162 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28127 5' -63.4 NC_005887.1 + 15053 0.66 0.250172
Target:  5'- -aCGCCuGCGgccUGCGCGGCcUGCGCGGc -3'
miRNA:   3'- aaGCGG-CGC---GCGUGCCGcGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 41639 0.66 0.250172
Target:  5'- -cUGCUGCGUcuGCGCGGCGCaCGCu-- -3'
miRNA:   3'- aaGCGGCGCG--CGUGCCGCGcGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 15623 0.66 0.250172
Target:  5'- aUCGa-GCGCGguCGcGCGCGC-CGAGu -3'
miRNA:   3'- aAGCggCGCGCguGC-CGCGCGuGCUU- -5'
28127 5' -63.4 NC_005887.1 + 35888 0.66 0.250172
Target:  5'- -aCGCCGCGCccGUACuucaGGuCGCGCACu-- -3'
miRNA:   3'- aaGCGGCGCG--CGUG----CC-GCGCGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 17500 0.66 0.250172
Target:  5'- --gGCCGUGCaugaugGCACGGaaauGCGCACGc- -3'
miRNA:   3'- aagCGGCGCG------CGUGCCg---CGCGUGCuu -5'
28127 5' -63.4 NC_005887.1 + 29180 0.66 0.243887
Target:  5'- cUUGCUGCGCugcgaggaucuGCGCGGCcuuaaGCuGCGCGAu -3'
miRNA:   3'- aAGCGGCGCG-----------CGUGCCG-----CG-CGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 10089 0.66 0.243887
Target:  5'- -cCGUCGUGUGgGCGGCccGCGC-CGAc -3'
miRNA:   3'- aaGCGGCGCGCgUGCCG--CGCGuGCUu -5'
28127 5' -63.4 NC_005887.1 + 10220 0.66 0.243887
Target:  5'- -aUGCC-CGCGCcggACGGCGCGUcUGAu -3'
miRNA:   3'- aaGCGGcGCGCG---UGCCGCGCGuGCUu -5'
28127 5' -63.4 NC_005887.1 + 18636 0.66 0.243887
Target:  5'- -aCGCCGCGacgaGCAUGuCGCcCGCGAAg -3'
miRNA:   3'- aaGCGGCGCg---CGUGCcGCGcGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 28478 0.66 0.237733
Target:  5'- -gCGCCuGCGCGCgcucggcugcgACGuGCGCGUgACGAc -3'
miRNA:   3'- aaGCGG-CGCGCG-----------UGC-CGCGCG-UGCUu -5'
28127 5' -63.4 NC_005887.1 + 19427 0.66 0.237733
Target:  5'- aUCGUCGC-CGCACGcGUcuGCuGCGCGAGc -3'
miRNA:   3'- aAGCGGCGcGCGUGC-CG--CG-CGUGCUU- -5'
28127 5' -63.4 NC_005887.1 + 1074 0.66 0.237733
Target:  5'- --aGCCG-GUGUACaGcGCGCGCACGGc -3'
miRNA:   3'- aagCGGCgCGCGUG-C-CGCGCGUGCUu -5'
28127 5' -63.4 NC_005887.1 + 28288 0.66 0.235913
Target:  5'- -aCGCCgaGCGCGCGCaGCGUcguggcgacuuguuGCugGAAg -3'
miRNA:   3'- aaGCGG--CGCGCGUGcCGCG--------------CGugCUU- -5'
28127 5' -63.4 NC_005887.1 + 17251 0.66 0.23171
Target:  5'- aUUGCCGCGUGCggccGCGuucGCGCGCucccacgccucGCGAu -3'
miRNA:   3'- aAGCGGCGCGCG----UGC---CGCGCG-----------UGCUu -5'
28127 5' -63.4 NC_005887.1 + 38871 0.66 0.23171
Target:  5'- -gUGCUGCGCGUuguCGGCGauaGCAUGu- -3'
miRNA:   3'- aaGCGGCGCGCGu--GCCGCg--CGUGCuu -5'
28127 5' -63.4 NC_005887.1 + 37495 0.66 0.23171
Target:  5'- -gCGCCGCGCuccacuccGCACcuGGCGUGCAgGc- -3'
miRNA:   3'- aaGCGGCGCG--------CGUG--CCGCGCGUgCuu -5'
28127 5' -63.4 NC_005887.1 + 35634 0.66 0.23171
Target:  5'- --gGCCGUGUGCcCGGCGCucgccGCACa-- -3'
miRNA:   3'- aagCGGCGCGCGuGCCGCG-----CGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 29643 0.66 0.231115
Target:  5'- cUCGCCGuCGUcacucacGCGCGGCGCgagguaGCACa-- -3'
miRNA:   3'- aAGCGGC-GCG-------CGUGCCGCG------CGUGcuu -5'
28127 5' -63.4 NC_005887.1 + 32397 0.66 0.230521
Target:  5'- cUUCGCCggcaucgGCGUGUgguccuacgcacuGCGGCGCGC-CGGc -3'
miRNA:   3'- -AAGCGG-------CGCGCG-------------UGCCGCGCGuGCUu -5'
28127 5' -63.4 NC_005887.1 + 41441 0.66 0.228158
Target:  5'- -aCGUCGCGCacggucugcucgaacGCuuccCGGCgGCGCGCGGAu -3'
miRNA:   3'- aaGCGGCGCG---------------CGu---GCCG-CGCGUGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.