Results 1 - 20 of 177 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28128 | 5' | -60.6 | NC_005887.1 | + | 40362 | 0.66 | 0.395612 |
Target: 5'- aGC-GCGGCcguGCCGCucguCGCGCGCGAg -3' miRNA: 3'- cCGuUGCUG---UGGCGcc--GCGCGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 38284 | 0.66 | 0.395612 |
Target: 5'- cGGCcACG-CGCaa-GGCuGCGCGCGAc -3' miRNA: 3'- -CCGuUGCuGUGgcgCCG-CGCGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 12558 | 0.66 | 0.395612 |
Target: 5'- uGGCGuCGACgGCCGcCGGCaUGCGCa-- -3' miRNA: 3'- -CCGUuGCUG-UGGC-GCCGcGCGCGcua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 16190 | 0.66 | 0.395612 |
Target: 5'- cGGgGugGuuGCgCGCGGCGCaGCGCc-- -3' miRNA: 3'- -CCgUugCugUG-GCGCCGCG-CGCGcua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 16426 | 0.66 | 0.395612 |
Target: 5'- aGGCcgagauCGACgggaucgagaACCGC-GUGCGCGCGGg -3' miRNA: 3'- -CCGuu----GCUG----------UGGCGcCGCGCGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 40670 | 0.66 | 0.395612 |
Target: 5'- cGGCcGCaccauccuGCACC-UGGCGCGCGCGc- -3' miRNA: 3'- -CCGuUGc-------UGUGGcGCCGCGCGCGCua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 3699 | 0.66 | 0.395612 |
Target: 5'- uGGaCGGCGACagguuuucacgGCCGaaGCGCuGCGCGGc -3' miRNA: 3'- -CC-GUUGCUG-----------UGGCgcCGCG-CGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 16516 | 0.66 | 0.394718 |
Target: 5'- aGGCcgaucGCGuCGCCGcCGGCGCcgaguggGCGCGu- -3' miRNA: 3'- -CCGu----UGCuGUGGC-GCCGCG-------CGCGCua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 13725 | 0.66 | 0.392932 |
Target: 5'- cGGCAagccgaacaucgucGCGAUGCCGUacGGCuG-GCGCGAg -3' miRNA: 3'- -CCGU--------------UGCUGUGGCG--CCG-CgCGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 39776 | 0.66 | 0.386724 |
Target: 5'- uGGUcGCGGCGCuCGCGccgaucguuGCGCGCGUc-- -3' miRNA: 3'- -CCGuUGCUGUG-GCGC---------CGCGCGCGcua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 41640 | 0.66 | 0.386724 |
Target: 5'- uGCuGCGuCugCGCGGCGCaCGCu-- -3' miRNA: 3'- cCGuUGCuGugGCGCCGCGcGCGcua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 17158 | 0.66 | 0.386724 |
Target: 5'- cGGCGaagaucGCGAgG-CGUGGgaGCGCGCGAa -3' miRNA: 3'- -CCGU------UGCUgUgGCGCCg-CGCGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 9284 | 0.66 | 0.386724 |
Target: 5'- cGGCAcgGCGACGCCGCaGGUuaCGgGCa-- -3' miRNA: 3'- -CCGU--UGCUGUGGCG-CCGc-GCgCGcua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 28985 | 0.66 | 0.386724 |
Target: 5'- uGCGuCGACGCaaugGGCGCGCGCa-- -3' miRNA: 3'- cCGUuGCUGUGgcg-CCGCGCGCGcua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 12868 | 0.66 | 0.385843 |
Target: 5'- aGGC-ACGA--CCGUGGCaggugccGUGCGCGAg -3' miRNA: 3'- -CCGuUGCUguGGCGCCG-------CGCGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 26056 | 0.66 | 0.381454 |
Target: 5'- uGGCAugGuggugcuccuggucaGCGCgucaGCGGCcCGCGCGGc -3' miRNA: 3'- -CCGUugC---------------UGUGg---CGCCGcGCGCGCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 36706 | 0.66 | 0.377968 |
Target: 5'- gGGCGcagaccACGACG-CGCaGGagaagGCGCGCGAUg -3' miRNA: 3'- -CCGU------UGCUGUgGCG-CCg----CGCGCGCUA- -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 16117 | 0.66 | 0.377968 |
Target: 5'- -cCggUGGCGCUGCGcCGCGCGCa-- -3' miRNA: 3'- ccGuuGCUGUGGCGCcGCGCGCGcua -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 27572 | 0.66 | 0.377968 |
Target: 5'- cGCAGCGgaaguACAgCGCGaGCGCGcCGuCGAg -3' miRNA: 3'- cCGUUGC-----UGUgGCGC-CGCGC-GC-GCUa -5' |
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28128 | 5' | -60.6 | NC_005887.1 | + | 14704 | 0.66 | 0.377968 |
Target: 5'- cGCGGCGGgcggGCCG-GGCGCG-GCGAUc -3' miRNA: 3'- cCGUUGCUg---UGGCgCCGCGCgCGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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