miRNA display CGI


Results 1 - 20 of 136 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28132 5' -60.2 NC_005887.1 + 15091 0.66 0.402015
Target:  5'- cGcCCGCAUucuucagcgcgagcaUCAGCuCGGGCGGCACg-- -3'
miRNA:   3'- cC-GGCGUG---------------AGUCG-GCUCGUCGUGgcu -5'
28132 5' -60.2 NC_005887.1 + 13595 0.66 0.398384
Target:  5'- aGGCCGCGuacUUCAucGCUGcuGGCAGCGCgGc -3'
miRNA:   3'- -CCGGCGU---GAGU--CGGC--UCGUCGUGgCu -5'
28132 5' -60.2 NC_005887.1 + 13059 0.66 0.398384
Target:  5'- cGCCGCguACaaGGCCGAuccguggaacGCGGCGCuCGAu -3'
miRNA:   3'- cCGGCG--UGagUCGGCU----------CGUCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 11164 0.66 0.398384
Target:  5'- cGCgCGCAC-CAGCCGAuGCGcCACgCGGa -3'
miRNA:   3'- cCG-GCGUGaGUCGGCU-CGUcGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 3164 0.66 0.3894
Target:  5'- uGCCGCGcCUCgacaAGuUCGGGCAGCuGCCGc -3'
miRNA:   3'- cCGGCGU-GAG----UC-GGCUCGUCG-UGGCu -5'
28132 5' -60.2 NC_005887.1 + 34674 0.66 0.3894
Target:  5'- cGGauCCGcCACguuGUCGAGCAGCAgCGGg -3'
miRNA:   3'- -CC--GGC-GUGaguCGGCUCGUCGUgGCU- -5'
28132 5' -60.2 NC_005887.1 + 16516 0.66 0.3894
Target:  5'- aGGCCGauCGCgUC-GCCGc-CGGCGCCGAg -3'
miRNA:   3'- -CCGGC--GUG-AGuCGGCucGUCGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 30531 0.66 0.3894
Target:  5'- aGGCgGCcgUCGGCCGAgacgccacGCAGCAgCGu -3'
miRNA:   3'- -CCGgCGugAGUCGGCU--------CGUCGUgGCu -5'
28132 5' -60.2 NC_005887.1 + 19157 0.66 0.388509
Target:  5'- cGCUgGUACUCGGCaccgauuauuccgUGAGCGGCGCgGGc -3'
miRNA:   3'- cCGG-CGUGAGUCG-------------GCUCGUCGUGgCU- -5'
28132 5' -60.2 NC_005887.1 + 35330 0.66 0.388509
Target:  5'- uGCCGCGCgccgcggCGGCCGGccacgagcuucacGCccGGCACCa- -3'
miRNA:   3'- cCGGCGUGa------GUCGGCU-------------CG--UCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 36363 0.66 0.388509
Target:  5'- cGCCGCGCagaUCGGCCaaccggacgagucGAGCgAGUACgCGGa -3'
miRNA:   3'- cCGGCGUG---AGUCGG-------------CUCG-UCGUG-GCU- -5'
28132 5' -60.2 NC_005887.1 + 41602 0.66 0.38055
Target:  5'- cGGCCcagGUGCggCGGCCGGcGCGGC-CCGu -3'
miRNA:   3'- -CCGG---CGUGa-GUCGGCU-CGUCGuGGCu -5'
28132 5' -60.2 NC_005887.1 + 12600 0.66 0.38055
Target:  5'- cGGCCGCgacGCUCGGCgugcUGAcGCAGaagcCCGAc -3'
miRNA:   3'- -CCGGCG---UGAGUCG----GCU-CGUCgu--GGCU- -5'
28132 5' -60.2 NC_005887.1 + 31407 0.66 0.38055
Target:  5'- uGCCGUgguUCAGCgGGGUAGgGCUGAa -3'
miRNA:   3'- cCGGCGug-AGUCGgCUCGUCgUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 24974 0.66 0.378796
Target:  5'- cGGCCGCGagggaCAggucgggguaguuGCCGAGCGucagcucGCGCCGGn -3'
miRNA:   3'- -CCGGCGUga---GU-------------CGGCUCGU-------CGUGGCU- -5'
28132 5' -60.2 NC_005887.1 + 26143 0.66 0.377921
Target:  5'- cGCCGCGCg-GGCCGcugacgcgcugaccAGgAGCACCa- -3'
miRNA:   3'- cCGGCGUGagUCGGC--------------UCgUCGUGGcu -5'
28132 5' -60.2 NC_005887.1 + 26424 0.66 0.375305
Target:  5'- cGGCCGCGCgggaacgcgcgcugCAGCCGcGCGagauCCGAc -3'
miRNA:   3'- -CCGGCGUGa-------------GUCGGCuCGUcgu-GGCU- -5'
28132 5' -60.2 NC_005887.1 + 16472 0.66 0.371835
Target:  5'- cGGCCGCgugaGCUucCGGCCG-GCGGCcgucUCGAc -3'
miRNA:   3'- -CCGGCG----UGA--GUCGGCuCGUCGu---GGCU- -5'
28132 5' -60.2 NC_005887.1 + 25523 0.66 0.371835
Target:  5'- uGGCgGCAUaaUCGucgccGCCGAGCGGUGCgCGu -3'
miRNA:   3'- -CCGgCGUG--AGU-----CGGCUCGUCGUG-GCu -5'
28132 5' -60.2 NC_005887.1 + 12204 0.66 0.371835
Target:  5'- aGGacaGCGC-CGcGCCGGGC-GCGCCGGa -3'
miRNA:   3'- -CCgg-CGUGaGU-CGGCUCGuCGUGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.