Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28134 | 5' | -60 | NC_005887.1 | + | 9895 | 0.66 | 0.408089 |
Target: 5'- uCCaGCcGGUGCAGGUCGGCgGCaCGAUc- -3' miRNA: 3'- -GG-CGuUCGCGUCCGGCUG-CG-GCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 21507 | 0.66 | 0.408089 |
Target: 5'- gCCgGCAaucGGCGCAa--CGACGCCGGCu- -3' miRNA: 3'- -GG-CGU---UCGCGUccgGCUGCGGCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 41604 | 0.66 | 0.408089 |
Target: 5'- gCC-CAGGUGCGgcGGCCGGCGCggccCGugAGg -3' miRNA: 3'- -GGcGUUCGCGU--CCGGCUGCG----GCugUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 31129 | 0.66 | 0.406248 |
Target: 5'- -gGCGAGCuugccggGCAGGCCGugcgcauACGCCuGCAc -3' miRNA: 3'- ggCGUUCG-------CGUCCGGC-------UGCGGcUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 4208 | 0.66 | 0.40258 |
Target: 5'- gCUGCAGcgcGCGCAGGagaaaggcgugcugcUCG-CGCCGACGc -3' miRNA: 3'- -GGCGUU---CGCGUCC---------------GGCuGCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 13385 | 0.66 | 0.398934 |
Target: 5'- uCCGCGA-UGC-GGCCGGCGuuGcCGAa -3' miRNA: 3'- -GGCGUUcGCGuCCGGCUGCggCuGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 21814 | 0.66 | 0.398934 |
Target: 5'- uCCGC-GGCGCu-GCCGggcGCGCCGAa-- -3' miRNA: 3'- -GGCGuUCGCGucCGGC---UGCGGCUguu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 9477 | 0.66 | 0.398934 |
Target: 5'- aCGguGGCGaCGaacgacccGGCCGACcCCGGCAu -3' miRNA: 3'- gGCguUCGC-GU--------CCGGCUGcGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 39816 | 0.66 | 0.398934 |
Target: 5'- uUCGCAcugcuggauaaAGCGCgacGGGCCGcCGUCGcACAu -3' miRNA: 3'- -GGCGU-----------UCGCG---UCCGGCuGCGGC-UGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 1840 | 0.66 | 0.398934 |
Target: 5'- gCCGac-GCGCAGGUCGAgcaUGUCGAgGAu -3' miRNA: 3'- -GGCguuCGCGUCCGGCU---GCGGCUgUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 17048 | 0.66 | 0.398934 |
Target: 5'- gCGCAgcGGCacGCuuGGGCgGACGCCGuCAu -3' miRNA: 3'- gGCGU--UCG--CG--UCCGgCUGCGGCuGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 34098 | 0.66 | 0.389911 |
Target: 5'- uCCaGUGAGCGguGacGCCGAgCGCuCGGCAGa -3' miRNA: 3'- -GG-CGUUCGCguC--CGGCU-GCG-GCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 2408 | 0.66 | 0.389911 |
Target: 5'- gCCGCuggcuucgAGGCGaa-GCCcGCGCCGACGAa -3' miRNA: 3'- -GGCG--------UUCGCgucCGGcUGCGGCUGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 35423 | 0.66 | 0.389911 |
Target: 5'- cCCGCGuGGUGcCGGGCgugaagcuCGugGCCGGCc- -3' miRNA: 3'- -GGCGU-UCGC-GUCCG--------GCugCGGCUGuu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 34272 | 0.66 | 0.389911 |
Target: 5'- cUCGCGgcuuGCGCAuGCCGuCGCCGuGCGg -3' miRNA: 3'- -GGCGUu---CGCGUcCGGCuGCGGC-UGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 2562 | 0.66 | 0.389911 |
Target: 5'- gUGCAcGaGCAGGCCGGgcuCGCCGuCGAu -3' miRNA: 3'- gGCGUuCgCGUCCGGCU---GCGGCuGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 27771 | 0.66 | 0.384562 |
Target: 5'- gCGCcGGCG-AGGUagagcgccaugacgaCGGCGCCGACGc -3' miRNA: 3'- gGCGuUCGCgUCCG---------------GCUGCGGCUGUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 8096 | 0.66 | 0.381022 |
Target: 5'- gCGCGcGCGCAGcucGCCGcgcuCGCCGAgGc -3' miRNA: 3'- gGCGUuCGCGUC---CGGCu---GCGGCUgUu -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 4027 | 0.66 | 0.381022 |
Target: 5'- uUCGCGAGCaacgGCGGGUCGacgagcuucugcGCGCCG-CGGa -3' miRNA: 3'- -GGCGUUCG----CGUCCGGC------------UGCGGCuGUU- -5' |
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28134 | 5' | -60 | NC_005887.1 | + | 40110 | 0.66 | 0.381022 |
Target: 5'- aCgGUAucgGGCGUAGGCCGGcCGCCu-CGAg -3' miRNA: 3'- -GgCGU---UCGCGUCCGGCU-GCGGcuGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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