miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28136 3' -49.7 NC_005887.1 + 31414 0.65 0.938198
Target:  5'- cUGGACGuggGCCaUCGacgacggcccgguCGGCACGUGGg -3'
miRNA:   3'- cACUUGUuaaUGG-AGC-------------GCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 13595 0.66 0.935457
Target:  5'- -aGGcCGcgUACUUcaucgcugcuggcagCGCGGCGCGCGGc -3'
miRNA:   3'- caCUuGUuaAUGGA---------------GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 31301 0.66 0.933209
Target:  5'- -aGAACGGUgGCauguucgaUCGCGucgugcugaaGCACGCGGc -3'
miRNA:   3'- caCUUGUUAaUGg-------AGCGC----------UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 15378 0.66 0.933209
Target:  5'- -cGAGCAGgucgacGCCgCGCugaucGCGCGCGGg -3'
miRNA:   3'- caCUUGUUaa----UGGaGCGc----UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 8527 0.66 0.921237
Target:  5'- -cGAGCGGUUgcGCCgggcgcucgaUCGCGuugACGCGGa -3'
miRNA:   3'- caCUUGUUAA--UGG----------AGCGCug-UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 41161 0.66 0.921237
Target:  5'- -cGucuGCAGUuccucUGCCUCGUccacgaGCGCGCGGa -3'
miRNA:   3'- caCu--UGUUA-----AUGGAGCGc-----UGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 3089 0.66 0.921237
Target:  5'- -cGAGCAuggcuUUGCC-CGCGGCGC-UGGc -3'
miRNA:   3'- caCUUGUu----AAUGGaGCGCUGUGcGCC- -5'
28136 3' -49.7 NC_005887.1 + 23932 0.66 0.914794
Target:  5'- -cGAugAcgUcgGCCUCGCGGCgucuGCGCa- -3'
miRNA:   3'- caCUugUuaA--UGGAGCGCUG----UGCGcc -5'
28136 3' -49.7 NC_005887.1 + 40845 0.67 0.908048
Target:  5'- -cGAACcucgACCgccggcUCgGCGGCGCGCGGc -3'
miRNA:   3'- caCUUGuuaaUGG------AG-CGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 15061 0.67 0.908048
Target:  5'- -cGGGCGGcacgccugcgGCCUgCGCGGCcuGCGCGGc -3'
miRNA:   3'- caCUUGUUaa--------UGGA-GCGCUG--UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 15469 0.67 0.908048
Target:  5'- cGUcGACGAUccgcUGCCcgcgCGCGAUcaGCGCGGc -3'
miRNA:   3'- -CAcUUGUUA----AUGGa---GCGCUG--UGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 529 0.67 0.908048
Target:  5'- cUGAACGcgUcgGCCgccgCGCGcCGCGcCGGa -3'
miRNA:   3'- cACUUGUuaA--UGGa---GCGCuGUGC-GCC- -5'
28136 3' -49.7 NC_005887.1 + 27021 0.67 0.908048
Target:  5'- uGUGcGCA---ACCUCgGCGAgCGCGCGa -3'
miRNA:   3'- -CACuUGUuaaUGGAG-CGCU-GUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 36836 0.67 0.901001
Target:  5'- --cAGCAGUUcgacaGCCuugcgcuggaUCGCGACGCGCGc -3'
miRNA:   3'- cacUUGUUAA-----UGG----------AGCGCUGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 611 0.67 0.901001
Target:  5'- -cGcGCug-UAUCcggCGCGGCGCGCGGc -3'
miRNA:   3'- caCuUGuuaAUGGa--GCGCUGUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 29725 0.67 0.893658
Target:  5'- --cAGCuGUgcUACCUCGCGcCGCGCGu -3'
miRNA:   3'- cacUUGuUA--AUGGAGCGCuGUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 39875 0.67 0.893658
Target:  5'- cUGAGC----GCCUCGCGcauCACGUGa -3'
miRNA:   3'- cACUUGuuaaUGGAGCGCu--GUGCGCc -5'
28136 3' -49.7 NC_005887.1 + 14687 0.67 0.893658
Target:  5'- -cGcACGAUcggGCUcgUCGCGGCGgGCGGg -3'
miRNA:   3'- caCuUGUUAa--UGG--AGCGCUGUgCGCC- -5'
28136 3' -49.7 NC_005887.1 + 34444 0.67 0.886023
Target:  5'- -gGAGCGGUcGCCUCGaagucgucuuCGuuCGCGCGGc -3'
miRNA:   3'- caCUUGUUAaUGGAGC----------GCu-GUGCGCC- -5'
28136 3' -49.7 NC_005887.1 + 31499 0.67 0.886023
Target:  5'- ----cCGAUUGCCgcgCGCGcgGCGCGGa -3'
miRNA:   3'- cacuuGUUAAUGGa--GCGCugUGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.