miRNA display CGI


Results 1 - 20 of 149 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28163 5' -55.4 NC_005887.1 + 1487 0.66 0.664871
Target:  5'- -cGgCGUgcgGCGCucGCGCGgCGCGGCCg -3'
miRNA:   3'- gaCaGCGau-UGCG--CGUGCaGCGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 26694 0.66 0.664871
Target:  5'- aUGUCGCgauACa-GC-CGUCGCgcGGCCg -3'
miRNA:   3'- gACAGCGau-UGcgCGuGCAGCG--UCGG- -5'
28163 5' -55.4 NC_005887.1 + 41278 0.66 0.664871
Target:  5'- -cGUCGacc-UGCGCACGggcgCGCugcuGCCg -3'
miRNA:   3'- gaCAGCgauuGCGCGUGCa---GCGu---CGG- -5'
28163 5' -55.4 NC_005887.1 + 18642 0.66 0.664871
Target:  5'- aCUGgaaCGCcgcGACGaGCAUGUCGCccgcgaAGCCg -3'
miRNA:   3'- -GACa--GCGa--UUGCgCGUGCAGCG------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 28194 0.66 0.664871
Target:  5'- gCUGUgCGCcgcaucAGCGcCGCGCGUCuCGGCg -3'
miRNA:   3'- -GACA-GCGa-----UUGC-GCGUGCAGcGUCGg -5'
28163 5' -55.4 NC_005887.1 + 17955 0.66 0.663758
Target:  5'- -aGUCGCacauAUGCGCGgGcUCGCcggcaucGGCCg -3'
miRNA:   3'- gaCAGCGau--UGCGCGUgC-AGCG-------UCGG- -5'
28163 5' -55.4 NC_005887.1 + 3478 0.66 0.653733
Target:  5'- cCUGgcgCGCUGAUGaucgaGCACGaCGuCGGCa -3'
miRNA:   3'- -GACa--GCGAUUGCg----CGUGCaGC-GUCGg -5'
28163 5' -55.4 NC_005887.1 + 42086 0.66 0.653733
Target:  5'- gCUGUCGCguggGGCGCG-AUGcCGC-GUCg -3'
miRNA:   3'- -GACAGCGa---UUGCGCgUGCaGCGuCGG- -5'
28163 5' -55.4 NC_005887.1 + 5578 0.66 0.653733
Target:  5'- -cGaCGCUGACcuGCGCcaguuCGUCGaGGCCa -3'
miRNA:   3'- gaCaGCGAUUG--CGCGu----GCAGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 6461 0.66 0.653733
Target:  5'- uUGUCGaCUucCGCGUACGcuucgaGCAuGCCg -3'
miRNA:   3'- gACAGC-GAuuGCGCGUGCag----CGU-CGG- -5'
28163 5' -55.4 NC_005887.1 + 11367 0.66 0.653733
Target:  5'- cCUGaUC---AGCGCGgGCGUCagcGCAGCCg -3'
miRNA:   3'- -GAC-AGcgaUUGCGCgUGCAG---CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 41275 0.66 0.653733
Target:  5'- -gGUCacggGCacgacGACGCGCGgGUCggauGCAGCCa -3'
miRNA:   3'- gaCAG----CGa----UUGCGCGUgCAG----CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 42186 0.66 0.653733
Target:  5'- --uUCGC--GCGCGCuggcuCGUCGCAuuGCUg -3'
miRNA:   3'- gacAGCGauUGCGCGu----GCAGCGU--CGG- -5'
28163 5' -55.4 NC_005887.1 + 30828 0.66 0.653733
Target:  5'- --cUCGCc-GCGCGCACGgUCG-AGCUg -3'
miRNA:   3'- gacAGCGauUGCGCGUGC-AGCgUCGG- -5'
28163 5' -55.4 NC_005887.1 + 27110 0.66 0.653733
Target:  5'- -aGUCggGCggcAGCGUGCGCGgUCGCGcgcucGCCg -3'
miRNA:   3'- gaCAG--CGa--UUGCGCGUGC-AGCGU-----CGG- -5'
28163 5' -55.4 NC_005887.1 + 36069 0.66 0.647041
Target:  5'- --cUCGCgcACGCcgucgauguacagcuGCACGUagGCGGCCa -3'
miRNA:   3'- gacAGCGauUGCG---------------CGUGCAg-CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 32670 0.66 0.642576
Target:  5'- gUGUCGC--GCGUGCGCGcuUCgGCAaCCg -3'
miRNA:   3'- gACAGCGauUGCGCGUGC--AG-CGUcGG- -5'
28163 5' -55.4 NC_005887.1 + 35315 0.66 0.642576
Target:  5'- uCUGcaUCGCUccacuGC-CGCGCGcCGCGGCg -3'
miRNA:   3'- -GAC--AGCGAu----UGcGCGUGCaGCGUCGg -5'
28163 5' -55.4 NC_005887.1 + 2683 0.66 0.642576
Target:  5'- cCUGgugCGCgugaaGCGUACGggcggcaaGCGGCCg -3'
miRNA:   3'- -GACa--GCGauug-CGCGUGCag------CGUCGG- -5'
28163 5' -55.4 NC_005887.1 + 31533 0.66 0.642576
Target:  5'- uUGUCGCUucgccauuGAcCGCGUuuccguagGCG-CGCAGUCg -3'
miRNA:   3'- gACAGCGA--------UU-GCGCG--------UGCaGCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.