Results 21 - 40 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28250 | 5' | -45.3 | NC_005902.1 | + | 179726 | 0.89 | 0.401899 |
Target: 5'- uUGUAUAUGGCUUAGGUCUuaaagauUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCAGA-------AUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 49995 | 0.89 | 0.402823 |
Target: 5'- aGUAUAUAGCUUAGGagUUAAAGGGUu -3' miRNA: 3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 122804 | 0.88 | 0.440863 |
Target: 5'- aGUAUAUAGCUUAGGggUUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 13226 | 0.88 | 0.440863 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 104205 | 0.88 | 0.450689 |
Target: 5'- -uUAUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 88603 | 0.87 | 0.491138 |
Target: 5'- aGUaaGUAUAGCUUAGGUgUUAAAGGGUa -3' miRNA: 3'- aCA--UAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 16919 | 0.87 | 0.501513 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 54378 | 0.87 | 0.501513 |
Target: 5'- -aUGUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 125576 | 0.87 | 0.501513 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 135831 | 0.87 | 0.501514 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 162785 | 0.87 | 0.501514 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 88866 | 0.87 | 0.501514 |
Target: 5'- -aUAUAUAGCUUAGGUgUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUCCAgAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 23652 | 0.86 | 0.543909 |
Target: 5'- aGUAUGUAGCUUAGGUgUUAAAGGGa -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCCa -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 39306 | 0.86 | 0.554698 |
Target: 5'- uUGUAUAUAGCUUAGGUgUUAAAGGa- -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUCCca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 87405 | 0.86 | 0.554698 |
Target: 5'- uUGUAUAUAGCUUAGGUa-UGAAGGGg -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgaAUUUCCCa -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 127425 | 0.86 | 0.554698 |
Target: 5'- -aUAUACAGCUUAaGUCUUAAAGGGUu -3' miRNA: 3'- acAUAUGUCGAAUcCAGAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 114438 | 0.85 | 0.598396 |
Target: 5'- aGUAUAUAGCUUAGGUgUUAAAGGa- -3' miRNA: 3'- aCAUAUGUCGAAUCCAgAAUUUCCca -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 27812 | 0.85 | 0.598396 |
Target: 5'- uUGUAUAUAGCUUAGGcaUUAAAGGGUu -3' miRNA: 3'- -ACAUAUGUCGAAUCCagAAUUUCCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 142025 | 0.82 | 0.74027 |
Target: 5'- gUGUAUAUAGCUUAGGUgUUAAAaGGUa -3' miRNA: 3'- -ACAUAUGUCGAAUCCAgAAUUUcCCA- -5' |
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28250 | 5' | -45.3 | NC_005902.1 | + | 78119 | 0.82 | 0.74027 |
Target: 5'- aGUAUAUAGCUUAGaGUUUaUAAAGGGUa -3' miRNA: 3'- aCAUAUGUCGAAUC-CAGA-AUUUCCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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