miRNA display CGI


Results 1 - 20 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28251 3' -40.9 NC_005902.1 + 135895 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUGUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 50203 0.66 1
Target:  5'- ---aGGUauaacccuuUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- uuucCCA---------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 140056 0.69 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAUu -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 58587 0.69 1
Target:  5'- uAAAGGGUUAAacauuaaauuaucUuuuuaacccuuuaagACUUAAGCUGUAUAUa -3'
miRNA:   3'- -UUUCCCAAUU-------------G---------------UGAAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 158123 0.68 1
Target:  5'- -----uUUAAUACUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 184852 0.68 1
Target:  5'- -uAGGuGUuaacccuuUAACACcUAAGCUGUAUAUa -3'
miRNA:   3'- uuUCC-CA--------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 29597 0.68 1
Target:  5'- uAAAGGauauuuacccuUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCc----------AAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 36790 0.68 1
Target:  5'- uAAGGauuaaccuuUUAACACUUAAGCUAUAc-- -3'
miRNA:   3'- uUUCCc--------AAUUGUGAAUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 145091 0.68 1
Target:  5'- uAAAGGGUgAAUACccAAGCUAUAc-- -3'
miRNA:   3'- -UUUCCCAaUUGUGaaUUCGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 15531 0.67 1
Target:  5'- ---aGGUUAAUACUUAAuCUAUAUAUu -3'
miRNA:   3'- uuucCCAAUUGUGAAUUcGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 134582 0.67 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUAc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 18847 0.66 1
Target:  5'- -uAGGaGUuaaccuuuUAACACcUAAGCUAUAUAc -3'
miRNA:   3'- uuUCC-CA--------AUUGUGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 165705 0.67 1
Target:  5'- aAAAGGuauuuaucuaUUAACACcUAAGCUAUAUAUa -3'
miRNA:   3'- -UUUCCc---------AAUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 120307 0.67 1
Target:  5'- uAAAGGaUUAAUACUU-AGUUAUAUAUa -3'
miRNA:   3'- -UUUCCcAAUUGUGAAuUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 118995 0.67 1
Target:  5'- uAAAGGGUaaaauacccuuUAACuCcUAAGCUAUAUAc -3'
miRNA:   3'- -UUUCCCA-----------AUUGuGaAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 162756 0.66 1
Target:  5'- -----uUUAACAUUUAAGCUAUAUGc -3'
miRNA:   3'- uuucccAAUUGUGAAUUCGAUAUAUa -5'
28251 3' -40.9 NC_005902.1 + 182926 0.66 1
Target:  5'- --cGGaGUuaauuuUAACACcUAAGCUAUAUAUg -3'
miRNA:   3'- uuuCC-CA------AUUGUGaAUUCGAUAUAUA- -5'
28251 3' -40.9 NC_005902.1 + 10120 0.66 1
Target:  5'- uAAAGGGUUAAUAUcUAAauuuGCUAUAUu- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUU----CGAUAUAua -5'
28251 3' -40.9 NC_005902.1 + 48563 0.66 1
Target:  5'- uAAAGGGUUAAUACcUAAaCUAUAc-- -3'
miRNA:   3'- -UUUCCCAAUUGUGaAUUcGAUAUaua -5'
28251 3' -40.9 NC_005902.1 + 39156 0.66 1
Target:  5'- aAGGGGGUguaAAUGCUUGAGUUAa---- -3'
miRNA:   3'- -UUUCCCAa--UUGUGAAUUCGAUauaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.