Results 1 - 20 of 419 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28254 | 3' | -43.1 | NC_005902.1 | + | 90173 | 0.66 | 1 |
Target: 5'- aUGCCUUaggaguuagagggUUAAUACaUAAGCUAUAUAu -3' miRNA: 3'- aAUGGGA-------------AAUUGUGgAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 145336 | 0.67 | 1 |
Target: 5'- -cACUCUU---UAUCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAauuGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 102204 | 0.67 | 1 |
Target: 5'- -aACCCUUUAACuCCUAAGaUAUc-- -3' miRNA: 3'- aaUGGGAAAUUGuGGAUUCgAUAuau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 25011 | 0.67 | 1 |
Target: 5'- -aACUCUU---UAUCUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAauuGUGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 34702 | 0.67 | 1 |
Target: 5'- gUAUCCUuuauucuuUUAACACCUAuaCUAUAUAu -3' miRNA: 3'- aAUGGGA--------AAUUGUGGAUucGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 6174 | 0.67 | 1 |
Target: 5'- -aACUCUUUAACucuuaaggcauuAUUUAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUUG------------UGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 16803 | 0.67 | 1 |
Target: 5'- -aACCCUUUAACuCCUAAgGCa----- -3' miRNA: 3'- aaUGGGAAAUUGuGGAUU-CGauauau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 49981 | 0.67 | 1 |
Target: 5'- -aACCCUUUAACuCCUAAgGCa----- -3' miRNA: 3'- aaUGGGAAAUUGuGGAUU-CGauauau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 54990 | 0.67 | 1 |
Target: 5'- -aACCCUUUAACcCCUAAgGCa----- -3' miRNA: 3'- aaUGGGAAAUUGuGGAUU-CGauauau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 89960 | 0.67 | 1 |
Target: 5'- -aACCCUUUAACuCCUAAgGCa----- -3' miRNA: 3'- aaUGGGAAAUUGuGGAUU-CGauauau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 111169 | 0.67 | 1 |
Target: 5'- -aACCCUUUAACuCCUAAuGCg----- -3' miRNA: 3'- aaUGGGAAAUUGuGGAUU-CGauauau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 58803 | 0.66 | 1 |
Target: 5'- gUACUUUUUAACauuuuaaACUUAAGCUAUAa- -3' miRNA: 3'- aAUGGGAAAUUG-------UGGAUUCGAUAUau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 133229 | 0.66 | 1 |
Target: 5'- -cACCUUUUAACACCUGu-UUAUAUu -3' miRNA: 3'- aaUGGGAAAUUGUGGAUucGAUAUAu -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 24302 | 0.66 | 1 |
Target: 5'- uUUACUCUUUAACA-CUAGGCcAUAc- -3' miRNA: 3'- -AAUGGGAAAUUGUgGAUUCGaUAUau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 19796 | 0.66 | 1 |
Target: 5'- -aACUCUUUAACGCauaAGGCuUAUAUAa -3' miRNA: 3'- aaUGGGAAAUUGUGga-UUCG-AUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 31154 | 0.66 | 1 |
Target: 5'- aUACCCUUUAACuCCUcuacauGCUGa--- -3' miRNA: 3'- aAUGGGAAAUUGuGGAuu----CGAUauau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 160882 | 0.66 | 1 |
Target: 5'- -----aUUUAACcCCUAAGCUAUAUAc -3' miRNA: 3'- aaugggAAAUUGuGGAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 75963 | 0.66 | 1 |
Target: 5'- -aACCCUUUAua---UAAGCUAUAUAc -3' miRNA: 3'- aaUGGGAAAUuguggAUUCGAUAUAU- -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 140684 | 0.66 | 1 |
Target: 5'- -aACuCUUUUAACAUCcAAGCUAUAa- -3' miRNA: 3'- aaUG-GGAAAUUGUGGaUUCGAUAUau -5' |
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28254 | 3' | -43.1 | NC_005902.1 | + | 18693 | 0.66 | 1 |
Target: 5'- uUUACCCUUUAAUuCCUaAAGCa----- -3' miRNA: 3'- -AAUGGGAAAUUGuGGA-UUCGauauau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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