miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28257 3' -47.8 NC_005902.1 + 114319 0.76 0.875016
Target:  5'- uACCCUUUAAUUCCAcauCGUCAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 111169 0.83 0.501463
Target:  5'- aACCCUUUAACUCCuaAUGCGUUGUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGG--UACGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 110248 0.73 0.956996
Target:  5'- uACCCUUUAAUUCCAcaUGUCAUUAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 110167 0.68 0.997137
Target:  5'- uACCCUUUAAUUCCuaagGCaUUGUCAGa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 110135 0.72 0.973957
Target:  5'- uACUCUUUAAUUCCAUGUuaUUAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 109654 0.72 0.973957
Target:  5'- aAUCCUUUAAUUCUAUGCuGUUAUUggUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUACG-CAGUAGuuA- -5'
28257 3' -47.8 NC_005902.1 + 107241 0.79 0.705084
Target:  5'- aACCCUUUAACUCUuaagGUGUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 106072 0.7 0.991441
Target:  5'- uAUCCUUUAACUUCAcacUGUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 104233 0.7 0.990167
Target:  5'- uAUCCUUUAAUUCUAUGUaaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGUACGc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 104142 0.78 0.767345
Target:  5'- cACCUUUUAACUCCAUGuUGUUAUUGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAC-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 103831 0.7 0.988748
Target:  5'- aACCCUUUAACUUUcaaaGUGUCAUUGAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 102204 0.7 0.987176
Target:  5'- aACCCUUUAACUCCuaaGauaUCAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua-Cgc-AGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 98703 0.7 0.987176
Target:  5'- -gCCUUUAACUCUuaagGUGUCAUUAAc -3'
miRNA:   3'- ugGGAAAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 95871 0.68 0.997599
Target:  5'- aACCCUcUAACUCCuaagGCaUUAUCAAc -3'
miRNA:   3'- -UGGGAaAUUGAGGua--CGcAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 95528 0.86 0.36875
Target:  5'- uACCCUUUAACUCCAcauCGUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUac-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 94950 0.76 0.859158
Target:  5'- uACCCUUUAACUCCAcaCaUCAUCAAUa -3'
miRNA:   3'- -UGGGAAAUUGAGGUacGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 92530 0.67 0.998874
Target:  5'- aACCCccUGACUCCuaaaGUGUCAUUGAc -3'
miRNA:   3'- -UGGGaaAUUGAGGua--CGCAGUAGUUa -5'
28257 3' -47.8 NC_005902.1 + 90488 0.78 0.79679
Target:  5'- aACCCUUUAACUCUuaagGCaUCAUCGAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 90125 0.79 0.747018
Target:  5'- uACCCUUUAAUUCUAUauCGUCAUCAAUg -3'
miRNA:   3'- -UGGGAAAUUGAGGUAc-GCAGUAGUUA- -5'
28257 3' -47.8 NC_005902.1 + 89960 0.75 0.882581
Target:  5'- aACCCUUUAACUCCuaagGCaUUAUCAAc -3'
miRNA:   3'- -UGGGAAAUUGAGGua--CGcAGUAGUUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.