miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28258 5' -41.1 NC_005902.1 + 97740 0.67 1
Target:  5'- aUUUAUUUGcAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- -AAGUAAGUaUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 67956 0.68 1
Target:  5'- cUUAUUUAUAUAUAGUUgGGGUu--- -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAgUCCAcaau -5'
28258 5' -41.1 NC_005902.1 + 80773 0.66 1
Target:  5'- --aGUggGUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aagUAagUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 156585 0.7 1
Target:  5'- cUUGUUUAUAUAUAaUUUGGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 16530 0.69 1
Target:  5'- ------gAUAUAUAGcUCAGGUGUUAa -3'
miRNA:   3'- aaguaagUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 146760 0.69 1
Target:  5'- -aCAagUAUAUAcaUGGUUUAGGUGUUAg -3'
miRNA:   3'- aaGUaaGUAUAU--AUCAAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 118676 0.68 1
Target:  5'- cUUAUUUAUAUAUAGUUaGGG-GUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCAAgUCCaCAAU- -5'
28258 5' -41.1 NC_005902.1 + 107824 0.68 1
Target:  5'- cUUAUUCGUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 84961 0.68 1
Target:  5'- gUUUGUUCAUAUAUAGUgUAGaUGUUAa -3'
miRNA:   3'- -AAGUAAGUAUAUAUCAaGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 117904 0.67 1
Target:  5'- aUCAUUgAUGUAaAGUUaaaGGGUGUUu -3'
miRNA:   3'- aAGUAAgUAUAUaUCAAg--UCCACAAu -5'
28258 5' -41.1 NC_005902.1 + 11065 0.67 1
Target:  5'- aUCAUUUGUAUAUAGcUUAaGUGUUAg -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 164868 0.66 1
Target:  5'- -cUAUUCAUAUAUAGcUUAaGUGUUAa -3'
miRNA:   3'- aaGUAAGUAUAUAUCaAGUcCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 179721 0.67 1
Target:  5'- cUCAUUUGUAUAUGGcUUAGGUcUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCCAcAAU- -5'
28258 5' -41.1 NC_005902.1 + 124415 0.67 1
Target:  5'- aUCAUUUGUAUAUAGcUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 135924 0.67 1
Target:  5'- -aCAguaaGUAUGUAGcUUAGGUGUUAg -3'
miRNA:   3'- aaGUaag-UAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 131701 0.66 1
Target:  5'- -----aUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 184835 0.66 1
Target:  5'- cUUAUUUGUAUAUAacUUAGGUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUcaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 142510 0.66 1
Target:  5'- cUCAUUUGUAUAUAGgUUAGaUGUUAa -3'
miRNA:   3'- aAGUAAGUAUAUAUCaAGUCcACAAU- -5'
28258 5' -41.1 NC_005902.1 + 182965 0.66 1
Target:  5'- -----gUAUAUAUAGcUUAGGUGUUAa -3'
miRNA:   3'- aaguaaGUAUAUAUCaAGUCCACAAU- -5'
28258 5' -41.1 NC_005902.1 + 73954 0.66 1
Target:  5'- aUUCAccacacuuuUUUAUAUAUGaUUUAGGUGUUAa -3'
miRNA:   3'- -AAGU---------AAGUAUAUAUcAAGUCCACAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.