miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 3' -45.3 NC_005902.1 + 55299 0.66 0.999997
Target:  5'- uAAUCCUUUAAuACUUAAGUUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 115065 0.66 0.999997
Target:  5'- uAACCCUUUAAccuuuuuaacACUUAAGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUc---------UGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23499 0.66 0.999997
Target:  5'- -uCCCUUUAAcAUUUAAGCUaUAUGCa -3'
miRNA:   3'- uuGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 98636 0.66 0.999997
Target:  5'- -cCCCUUcau-ACCUAAGCUaUAUACa -3'
miRNA:   3'- uuGGGAAauucUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 174589 0.66 0.999995
Target:  5'- uGACCgagUUAAcACCUAAGCUaUAUACg -3'
miRNA:   3'- -UUGGga-AAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 88664 0.66 0.999994
Target:  5'- uAACCUUUUAauuauuaaccuacuuAGAUCUAAGauuuuugaaCUGUAUGCa -3'
miRNA:   3'- -UUGGGAAAU---------------UCUGGAUUC---------GACAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 104329 0.66 0.999993
Target:  5'- uAACCCUUUAAcAUCUAAGCcaugaguaaGUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGa--------CAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 90797 0.66 0.999993
Target:  5'- uAACCCUUUAAauCCUAAGgCU-UAUACa -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUUC-GAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 108898 0.66 0.999993
Target:  5'- uAACCUUUUAAcAgCUAGGCUaUAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUgGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 146424 0.66 0.999993
Target:  5'- uAAUCCUUUAAcACCUAAGCUa----- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcauaug -5'
28273 3' -45.3 NC_005902.1 + 137771 0.66 0.999986
Target:  5'- uAACUUUUUAAcACCUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 91998 0.66 0.999986
Target:  5'- uGCCCUUUAAcuuuuuaaauACCUAAGCUaUAUAUg -3'
miRNA:   3'- uUGGGAAAUUc---------UGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 42104 0.67 0.99998
Target:  5'- uAACCCUUUAAcAUCUAAacuuGCUGUAUu- -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUU----CGACAUAug -5'
28273 3' -45.3 NC_005902.1 + 28071 0.67 0.99998
Target:  5'- uAACCCUUUAAauCCUAAuguuuGCUGUGUucACu -3'
miRNA:   3'- -UUGGGAAAUUcuGGAUU-----CGACAUA--UG- -5'
28273 3' -45.3 NC_005902.1 + 63611 0.67 0.99998
Target:  5'- uACCuCUUUAAcAUCUAAGCUaUAUACa -3'
miRNA:   3'- uUGG-GAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 161771 0.67 0.999972
Target:  5'- uAAUCCUUUAAcACCUAAGgUGUcauugaugAUACa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCgACA--------UAUG- -5'
28273 3' -45.3 NC_005902.1 + 48251 0.67 0.999972
Target:  5'- uAAUCCUUUAAcACUUAAGCUaUAUAUa -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 23463 0.67 0.999972
Target:  5'- uAGCCCUUUAAcACCUAAuCUaUAUACu -3'
miRNA:   3'- -UUGGGAAAUUcUGGAUUcGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 78333 0.67 0.999972
Target:  5'- uACCCUUUAuaaACuCUAAGCUaUAUACu -3'
miRNA:   3'- uUGGGAAAUuc-UG-GAUUCGAcAUAUG- -5'
28273 3' -45.3 NC_005902.1 + 96195 0.67 0.999972
Target:  5'- uAACCC-UUAAcACCUAAGUUaUAUACa -3'
miRNA:   3'- -UUGGGaAAUUcUGGAUUCGAcAUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.