miRNA display CGI


Results 21 - 40 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28273 5' -42.1 NC_005902.1 + 169652 0.91 0.55824
Target:  5'- -aAUAUACAGCUUAaGUGUUAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 169577 0.82 0.938757
Target:  5'- -aGUGUAUAGUUUAGGUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 169528 0.66 1
Target:  5'- --cUAUAUAuCUcAGGUGUUAcAGGGu -3'
miRNA:   3'- uauAUAUGUcGAaUCCACAAUuUCCC- -5'
28273 5' -42.1 NC_005902.1 + 167459 0.66 1
Target:  5'- -aAUAUAUAaCUUAGGUGUUAAAa-- -3'
miRNA:   3'- uaUAUAUGUcGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 167365 1.04 0.143952
Target:  5'- -aGUAUAUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 167291 0.89 0.659481
Target:  5'- uUGUAUAUAaCUUAGGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUcGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 167185 0.87 0.737061
Target:  5'- -cGUAUAUAGCUUAGGUGUUAAAaGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUcCC- -5'
28273 5' -42.1 NC_005902.1 + 166339 0.76 0.995877
Target:  5'- cAUGUAUAUAGCUUAaGUaUUAAAGGGu -3'
miRNA:   3'- -UAUAUAUGUCGAAUcCAcAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 165978 0.86 0.789379
Target:  5'- uUGUAUAUGGCUUAuGUGUUAAAGGGu -3'
miRNA:   3'- uAUAUAUGUCGAAUcCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 163657 0.7 0.999998
Target:  5'- --uUAUAUAGcCUUAGGauUUAAAGGGu -3'
miRNA:   3'- uauAUAUGUC-GAAUCCacAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 163597 0.77 0.992219
Target:  5'- -cAUAUAUAGCUUAGaUGUUaAAAGGGu -3'
miRNA:   3'- uaUAUAUGUCGAAUCcACAA-UUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 163427 0.8 0.970944
Target:  5'- -aAUAUAUAGCUUAGGUGUUAacccuuuaaauccuAAGGc -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAU--------------UUCCc -5'
28273 5' -42.1 NC_005902.1 + 162753 0.82 0.933356
Target:  5'- -cAUAUAUAGCUUAGGUaUUAAAGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCAcAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 162630 0.81 0.943869
Target:  5'- uUGUAUAUAGCUUGGGUGUUAAc--- -3'
miRNA:   3'- uAUAUAUGUCGAAUCCACAAUUuccc -5'
28273 5' -42.1 NC_005902.1 + 162599 0.97 0.323459
Target:  5'- -aGUAUGUAGCUUAGGUGUUAAAGGGa -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUCCC- -5'
28273 5' -42.1 NC_005902.1 + 162432 0.93 0.48256
Target:  5'- uGUGUGUAUAGCUUAGGUGUUAAAGa- -3'
miRNA:   3'- -UAUAUAUGUCGAAUCCACAAUUUCcc -5'
28273 5' -42.1 NC_005902.1 + 162063 0.72 0.999961
Target:  5'- --uUAUAUAGUUUAGaUGUUAAAGGa -3'
miRNA:   3'- uauAUAUGUCGAAUCcACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 161980 0.74 0.999547
Target:  5'- -----gACAcCUUAGGUGUUAAAGGa -3'
miRNA:   3'- uauauaUGUcGAAUCCACAAUUUCCc -5'
28273 5' -42.1 NC_005902.1 + 158060 0.82 0.938757
Target:  5'- -aAUAUAUAGCUUAGGUGUUAAAu-- -3'
miRNA:   3'- uaUAUAUGUCGAAUCCACAAUUUccc -5'
28273 5' -42.1 NC_005902.1 + 157888 0.79 0.980083
Target:  5'- --uUAUAUAGCUUAGGUGUUAAAa-- -3'
miRNA:   3'- uauAUAUGUCGAAUCCACAAUUUccc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.