miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28277 5' -51.2 NC_005902.1 + 142075 0.66 0.991793
Target:  5'- uGUUAUUGAUGAUGCCUUcGaAGUUAAc -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAuCcUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 139848 0.82 0.365632
Target:  5'- cAUCAUUGAUGACGCCaugagUUAGGGGUUAAc -3'
miRNA:   3'- -UAGUAGCUACUGCGG-----AAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 137574 0.66 0.992878
Target:  5'- uGUUAUCaAUaAUGCCaUAGGAGCUAAa -3'
miRNA:   3'- -UAGUAGcUAcUGCGGaAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 134490 0.66 0.992878
Target:  5'- -cCAUUGuuaauaAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGCuac---UGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 131027 0.83 0.317664
Target:  5'- uGUUAUCGAUGACGCCUUAGaAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCcUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 122867 0.74 0.767093
Target:  5'- cAUUGUUGAUGAUGCCUUAGGAaUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 122823 0.68 0.959076
Target:  5'- cAUCAUCGAUGAUGCUUUguguuguuaAGGAuGCc-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAA---------UCCU-CGauu -5'
28277 5' -51.2 NC_005902.1 + 118539 0.7 0.931722
Target:  5'- uAUCAUCGAUGAUGCCUUAaagauuaaaGAGUa-- -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUc--------CUCGauu -5'
28277 5' -51.2 NC_005902.1 + 116975 0.74 0.736931
Target:  5'- uGUCGUCaAUGAUGUUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 114956 0.79 0.475478
Target:  5'- uAUUAUCaAUGAUGCCUUGGGAGUUAGg -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 113948 0.66 0.992878
Target:  5'- uGUUAaUGAUGcUGCUUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUaGCUACuGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 106108 0.77 0.610095
Target:  5'- -gCAUUaAUGAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- uaGUAGcUACUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 104496 0.72 0.841013
Target:  5'- cGUCAUCaAUGAUGCCUUAaGAGUUAAc -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUcCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 104298 0.68 0.972414
Target:  5'- cAUCAUUGAUGACGgUgugaggugGGGGGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCgGaa------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 104151 0.66 0.991793
Target:  5'- uAUCAUCaAUGAUGCUUUaagaauuaaAGGGGUUAAa -3'
miRNA:   3'- -UAGUAGcUACUGCGGAA---------UCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 100357 0.67 0.975188
Target:  5'- uGUCAUCaAUGAUGCCUUAaGAGUa-- -3'
miRNA:   3'- -UAGUAGcUACUGCGGAAUcCUCGauu -5'
28277 5' -51.2 NC_005902.1 + 99695 0.77 0.578164
Target:  5'- cAUUGUUGAUGACGCCUUAGGAaUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUCCUcGAUU- -5'
28277 5' -51.2 NC_005902.1 + 96089 0.74 0.767093
Target:  5'- uGUUGUUGAUaAUGCCUUAGGAGUUAGa -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 96073 0.74 0.736931
Target:  5'- uGUUGUUGAUaAUGCCUUAGGAGUUAAa -3'
miRNA:   3'- -UAGUAGCUAcUGCGGAAUCCUCGAUU- -5'
28277 5' -51.2 NC_005902.1 + 93506 0.67 0.980117
Target:  5'- cAUCAUUGAUGAUGCUUUAaaAGUUAAa -3'
miRNA:   3'- -UAGUAGCUACUGCGGAAUccUCGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.