miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28280 3' -38.9 NC_005902.1 + 157036 0.84 0.979174
Target:  5'- cUUUAACACCUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 156341 0.75 0.999996
Target:  5'- uUUUAACAUUUaAGCUAUAUAUGAAUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAc -5'
28280 3' -38.9 NC_005902.1 + 153648 0.67 1
Target:  5'- aUUUAACACUUaAACUAUAUAcGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUaCUUac -5'
28280 3' -38.9 NC_005902.1 + 147595 0.75 0.999995
Target:  5'- -gUAACACCUaAGCUAUAUAUaAAUGa -3'
miRNA:   3'- aaAUUGUGGAcUUGAUAUAUAcUUAC- -5'
28280 3' -38.9 NC_005902.1 + 146837 0.66 1
Target:  5'- --gAAUACCUaAGCUAUAUAcGAGUa -3'
miRNA:   3'- aaaUUGUGGAcUUGAUAUAUaCUUAc -5'
28280 3' -38.9 NC_005902.1 + 146183 0.86 0.950352
Target:  5'- cUUUAACACUUaAGCUAUAUAUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 144398 0.7 1
Target:  5'- cUUUAACAUCUaAACUAUAUAcaaguaagcauaaUGAGUGa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAU-------------ACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 143645 0.68 1
Target:  5'- aUUGACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 142234 0.68 1
Target:  5'- uUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 142157 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 139697 0.69 1
Target:  5'- gUUAAUACCUaGGCUAUAUAUaagGAAUa -3'
miRNA:   3'- aAAUUGUGGAcUUGAUAUAUA---CUUAc -5'
28280 3' -38.9 NC_005902.1 + 137776 0.71 1
Target:  5'- uUUUAACACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 135928 0.69 1
Target:  5'- --gAACGcCCUGAugUAUuagacacuUAUGAAUGg -3'
miRNA:   3'- aaaUUGU-GGACUugAUAu-------AUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 131311 0.72 1
Target:  5'- cUUUAAUACUUaAGCUAUAUAUGAAc- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 128775 0.67 1
Target:  5'- cUUUAACACCUaAGCUAUAUAc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 125782 0.71 1
Target:  5'- cUUUAACACCUaAGCUAUAUAUa---- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUAcuuac -5'
28280 3' -38.9 NC_005902.1 + 124727 0.66 1
Target:  5'- -aUAACACUUGGAUauugAUAUGAAa- -3'
miRNA:   3'- aaAUUGUGGACUUGaua-UAUACUUac -5'
28280 3' -38.9 NC_005902.1 + 122038 0.67 1
Target:  5'- aUUUAACACCauuuauuauaAGCUAaAUGUGAAUGa -3'
miRNA:   3'- -AAAUUGUGGac--------UUGAUaUAUACUUAC- -5'
28280 3' -38.9 NC_005902.1 + 116877 0.67 1
Target:  5'- gUUUAACACCUaAACUAUAUGc----- -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUAUacuuac -5'
28280 3' -38.9 NC_005902.1 + 116634 0.76 0.999977
Target:  5'- uUUUAACACCUaAGCUAUAUacaaGUGAGUa -3'
miRNA:   3'- -AAAUUGUGGAcUUGAUAUA----UACUUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.