Results 1 - 20 of 268 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28286 | 5' | -40.1 | NC_005902.1 | + | 1177 | 0.86 | 0.928718 |
Target: 5'- -cAUAUAUacAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUA--UCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 1450 | 0.71 | 1 |
Target: 5'- uGAGUAUAUAGCUUAaGUgUUAAAGc- -3' miRNA: 3'- -CUUAUAUAUCGAAUcCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 3108 | 0.75 | 0.999955 |
Target: 5'- -cAUAUAUAGCUUAGGUgUUAAAa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 3478 | 0.76 | 0.999891 |
Target: 5'- -uGUAUAUAGCUUAGGUgUUAaaaucGAGuGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAU-----UUC-CC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 4814 | 0.68 | 1 |
Target: 5'- aAGUAUAUAaCUUAGGagUUAAAGGc -3' miRNA: 3'- cUUAUAUAUcGAAUCCagAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 5214 | 0.7 | 1 |
Target: 5'- uGAGUAUAUcGCUUAGGUgUU--AGGu -3' miRNA: 3'- -CUUAUAUAuCGAAUCCAgAAuuUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 5421 | 0.82 | 0.988595 |
Target: 5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 5691 | 0.74 | 0.999992 |
Target: 5'- -uGUAUAUAGCUUAGGggUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUCCagAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 6228 | 0.87 | 0.903005 |
Target: 5'- uGAGUAUAUAGCUUAGuUgUUAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCcAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 6345 | 0.93 | 0.647262 |
Target: 5'- -uAUAUAUAGCUUAGGUUUUAAAGGa -3' miRNA: 3'- cuUAUAUAUCGAAUCCAGAAUUUCCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 7678 | 0.68 | 1 |
Target: 5'- -uGUAUAUAGCUUAGGUagagUAAAa-- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAga--AUUUccc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 8442 | 0.67 | 1 |
Target: 5'- uGAGUAUAucaaauaaUAGUUUAGGUgUUAAAaGGu -3' miRNA: 3'- -CUUAUAU--------AUCGAAUCCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 11449 | 0.74 | 0.999983 |
Target: 5'- -cGUAUAUAGCUUAGGUgUUAAcucGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUu--CCc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 12863 | 0.74 | 0.999994 |
Target: 5'- -uGUAUAUAaCUUAGGagUUAAGGGGu -3' miRNA: 3'- cuUAUAUAUcGAAUCCagAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 13225 | 0.96 | 0.523333 |
Target: 5'- -cAUAUAUAGCUUAGGUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 13435 | 0.82 | 0.985076 |
Target: 5'- aAGUAUAUAGCUUAaGUgUUAAAGGGu -3' miRNA: 3'- cUUAUAUAUCGAAUcCAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 15192 | 0.73 | 0.999999 |
Target: 5'- -uGUAUAUAGCUUAcaUgUUAAAGGGu -3' miRNA: 3'- cuUAUAUAUCGAAUccAgAAUUUCCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 15340 | 0.82 | 0.988595 |
Target: 5'- -cAUAUAUAGCUUAGGUgUUAAAGa- -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUCcc -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 15509 | 0.74 | 0.999994 |
Target: 5'- -uAUAUAUAGUUUAGGUgUUAAAaGGu -3' miRNA: 3'- cuUAUAUAUCGAAUCCAgAAUUUcCC- -5' |
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28286 | 5' | -40.1 | NC_005902.1 | + | 16058 | 0.78 | 0.999193 |
Target: 5'- uGAAUAUAUAGCUUAGa---UAAAGGGu -3' miRNA: 3'- -CUUAUAUAUCGAAUCcagaAUUUCCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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