Results 1 - 20 of 187 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28726 | 5' | -51.2 | NC_006146.1 | + | 15184 | 0.66 | 0.994436 |
Target: 5'- gAAGGCC-GACUGcgCGGCCGc-CUUCa -3' miRNA: 3'- gUUUCGGuUUGACa-GCCGGUucGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 14164 | 0.66 | 0.994436 |
Target: 5'- uGGAGCUGAGC-GUCuGcGCCAGGCUg- -3' miRNA: 3'- gUUUCGGUUUGaCAG-C-CGGUUCGAgg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 39654 | 0.66 | 0.994436 |
Target: 5'- -uGGGCUgAGACUGccUUGGCCuuggaggcggcGGGCUCCu -3' miRNA: 3'- guUUCGG-UUUGAC--AGCCGG-----------UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 39308 | 0.66 | 0.994436 |
Target: 5'- aGAGGCCuguguACUGggcUCGGCUGGcCUCCc -3' miRNA: 3'- gUUUCGGuu---UGAC---AGCCGGUUcGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 69088 | 0.66 | 0.994436 |
Target: 5'- ---cGCCGAACUcGUCG-UCGAGC-CCu -3' miRNA: 3'- guuuCGGUUUGA-CAGCcGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 102857 | 0.66 | 0.994436 |
Target: 5'- --cAGCCAGGgcagccgccacCUGgucgUGGCCGGGCcCCa -3' miRNA: 3'- guuUCGGUUU-----------GACa---GCCGGUUCGaGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 98334 | 0.66 | 0.994436 |
Target: 5'- aCGGGGCCGGGCg--CGGCCcgucccGgUCCa -3' miRNA: 3'- -GUUUCGGUUUGacaGCCGGuu----CgAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 15941 | 0.66 | 0.993554 |
Target: 5'- -uGGGCgAGGCUGggUGGCUggGCaggCCg -3' miRNA: 3'- guUUCGgUUUGACa-GCCGGuuCGa--GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 103799 | 0.66 | 0.993554 |
Target: 5'- -cGGGaCCAAaguACUcGUCuGCCAagAGCUCCg -3' miRNA: 3'- guUUC-GGUU---UGA-CAGcCGGU--UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 138215 | 0.66 | 0.993554 |
Target: 5'- uGAGGCUggGCUGaCGGggaUAAGCaUCCc -3' miRNA: 3'- gUUUCGGuuUGACaGCCg--GUUCG-AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 14758 | 0.66 | 0.993554 |
Target: 5'- aCGAGGUCAGGCa---GGCgGGGCUCg -3' miRNA: 3'- -GUUUCGGUUUGacagCCGgUUCGAGg -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 64833 | 0.66 | 0.99346 |
Target: 5'- --cAGCUcguguuuGGGCUGcaccuUCuGCCAGGCUCCa -3' miRNA: 3'- guuUCGG-------UUUGAC-----AGcCGGUUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 123498 | 0.66 | 0.992564 |
Target: 5'- --uGGUCAucAGCaUGgCGGCCAGacGCUCCa -3' miRNA: 3'- guuUCGGU--UUG-ACaGCCGGUU--CGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 139616 | 0.66 | 0.992564 |
Target: 5'- aGAAGCCucuguAUUGcUUGGCCAAGUcacuUCUg -3' miRNA: 3'- gUUUCGGuu---UGAC-AGCCGGUUCG----AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 3059 | 0.66 | 0.992564 |
Target: 5'- ---cGCCGAgaGCgcGUUGGCCcAGGCUaCCg -3' miRNA: 3'- guuuCGGUU--UGa-CAGCCGG-UUCGA-GG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 59863 | 0.66 | 0.992564 |
Target: 5'- uCAGGGagGAGgUGUC-GCCAucAGCUCCg -3' miRNA: 3'- -GUUUCggUUUgACAGcCGGU--UCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 165789 | 0.66 | 0.992564 |
Target: 5'- uCAGAGCCAcGgUGgcaCGGCCGgcuaggggGGCgUCCc -3' miRNA: 3'- -GUUUCGGUuUgACa--GCCGGU--------UCG-AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 40027 | 0.66 | 0.992564 |
Target: 5'- gGGGGCCu-GCUGggGGCCGuAGCcgacUCCg -3' miRNA: 3'- gUUUCGGuuUGACagCCGGU-UCG----AGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 88803 | 0.66 | 0.992564 |
Target: 5'- uGGAGCCu-GCUGggcauguuuggcUgGGCCugAGGCUCCc -3' miRNA: 3'- gUUUCGGuuUGAC------------AgCCGG--UUCGAGG- -5' |
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28726 | 5' | -51.2 | NC_006146.1 | + | 132622 | 0.66 | 0.992564 |
Target: 5'- aAGGGCCGGcAgUGU-GGCCc-GCUCCa -3' miRNA: 3'- gUUUCGGUU-UgACAgCCGGuuCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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