miRNA display CGI


Results 1 - 20 of 416 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28727 5' -66.7 NC_006146.1 + 166715 0.65 0.487402
Target:  5'- aGCCgGUUCCCGCCGaGCCcgucucggggcaggAgGCCgaGCCg -3'
miRNA:   3'- aCGGaCGGGGGCGGC-CGG--------------UgUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 131595 0.66 0.482116
Target:  5'- aGCCgagcccaguacacagGCCUCUGCU-GCCAC-CUGCCg -3'
miRNA:   3'- aCGGa--------------CGGGGGCGGcCGGUGuGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 85239 0.66 0.482116
Target:  5'- gGCCcuuucauccaccaggGUCCCCGUgGGCCA-ACCaGCCc -3'
miRNA:   3'- aCGGa--------------CGGGGGCGgCCGGUgUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 152273 0.66 0.482116
Target:  5'- cUGCCUGgagugCUCUGCUGGCCACcgaagguuuggucgcCCGCUg -3'
miRNA:   3'- -ACGGACg----GGGGCGGCCGGUGu--------------GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 62829 0.66 0.482116
Target:  5'- gUGCCUGUggCCCagGCUGGCCAUcgagauaguuuaucuCUGCCc -3'
miRNA:   3'- -ACGGACG--GGGg-CGGCCGGUGu--------------GGCGG- -5'
28727 5' -66.7 NC_006146.1 + 62329 0.66 0.481238
Target:  5'- gGCCagagacGCCgCCGCCaGCCAaGCCcaGCCa -3'
miRNA:   3'- aCGGa-----CGGgGGCGGcCGGUgUGG--CGG- -5'
28727 5' -66.7 NC_006146.1 + 159377 0.66 0.481238
Target:  5'- aGCUgaccGCCagCUCGCaGGCCGCGCUGUCc -3'
miRNA:   3'- aCGGa---CGG--GGGCGgCCGGUGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 151781 0.66 0.481238
Target:  5'- cGCCUGCCCaguaGCUugaugacgauGCCACACgGCa -3'
miRNA:   3'- aCGGACGGGgg--CGGc---------CGGUGUGgCGg -5'
28727 5' -66.7 NC_006146.1 + 61225 0.66 0.481238
Target:  5'- cUGCCUGCCUCUGCucuuguacguCGGCUu--CUGCUu -3'
miRNA:   3'- -ACGGACGGGGGCG----------GCCGGuguGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 104196 0.66 0.481238
Target:  5'- cGUCUGCgCCCC-CacggGGCCGCAa-GCCg -3'
miRNA:   3'- aCGGACG-GGGGcGg---CCGGUGUggCGG- -5'
28727 5' -66.7 NC_006146.1 + 124439 0.66 0.481238
Target:  5'- cUGCUggucgGCaCgCauCCGGCCuACGCCGCCg -3'
miRNA:   3'- -ACGGa----CG-GgGgcGGCCGG-UGUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 168281 0.66 0.472499
Target:  5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3'
miRNA:   3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 167349 0.66 0.472499
Target:  5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3'
miRNA:   3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5'
28727 5' -66.7 NC_006146.1 + 141784 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 144862 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 147940 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 151018 0.66 0.472499
Target:  5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3'
miRNA:   3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5'
28727 5' -66.7 NC_006146.1 + 75602 0.66 0.472499
Target:  5'- cGCCuacUGCCCCa-CCGuCUACAgCGCCu -3'
miRNA:   3'- aCGG---ACGGGGgcGGCcGGUGUgGCGG- -5'
28727 5' -66.7 NC_006146.1 + 80671 0.66 0.472499
Target:  5'- gGCCUcuCCCUCGgCuGCCuccucCACCGCCu -3'
miRNA:   3'- aCGGAc-GGGGGCgGcCGGu----GUGGCGG- -5'
28727 5' -66.7 NC_006146.1 + 123244 0.66 0.472499
Target:  5'- -cCCUGgCCgCCGCgcugGGCCGgGCCGCg -3'
miRNA:   3'- acGGACgGG-GGCGg---CCGGUgUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.