Results 1 - 20 of 416 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28727 | 5' | -66.7 | NC_006146.1 | + | 166715 | 0.65 | 0.487402 |
Target: 5'- aGCCgGUUCCCGCCGaGCCcgucucggggcaggAgGCCgaGCCg -3' miRNA: 3'- aCGGaCGGGGGCGGC-CGG--------------UgUGG--CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 131595 | 0.66 | 0.482116 |
Target: 5'- aGCCgagcccaguacacagGCCUCUGCU-GCCAC-CUGCCg -3' miRNA: 3'- aCGGa--------------CGGGGGCGGcCGGUGuGGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 85239 | 0.66 | 0.482116 |
Target: 5'- gGCCcuuucauccaccaggGUCCCCGUgGGCCA-ACCaGCCc -3' miRNA: 3'- aCGGa--------------CGGGGGCGgCCGGUgUGG-CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 152273 | 0.66 | 0.482116 |
Target: 5'- cUGCCUGgagugCUCUGCUGGCCACcgaagguuuggucgcCCGCUg -3' miRNA: 3'- -ACGGACg----GGGGCGGCCGGUGu--------------GGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 62829 | 0.66 | 0.482116 |
Target: 5'- gUGCCUGUggCCCagGCUGGCCAUcgagauaguuuaucuCUGCCc -3' miRNA: 3'- -ACGGACG--GGGg-CGGCCGGUGu--------------GGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 62329 | 0.66 | 0.481238 |
Target: 5'- gGCCagagacGCCgCCGCCaGCCAaGCCcaGCCa -3' miRNA: 3'- aCGGa-----CGGgGGCGGcCGGUgUGG--CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 159377 | 0.66 | 0.481238 |
Target: 5'- aGCUgaccGCCagCUCGCaGGCCGCGCUGUCc -3' miRNA: 3'- aCGGa---CGG--GGGCGgCCGGUGUGGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 151781 | 0.66 | 0.481238 |
Target: 5'- cGCCUGCCCaguaGCUugaugacgauGCCACACgGCa -3' miRNA: 3'- aCGGACGGGgg--CGGc---------CGGUGUGgCGg -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 61225 | 0.66 | 0.481238 |
Target: 5'- cUGCCUGCCUCUGCucuuguacguCGGCUu--CUGCUu -3' miRNA: 3'- -ACGGACGGGGGCG----------GCCGGuguGGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 104196 | 0.66 | 0.481238 |
Target: 5'- cGUCUGCgCCCC-CacggGGCCGCAa-GCCg -3' miRNA: 3'- aCGGACG-GGGGcGg---CCGGUGUggCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 124439 | 0.66 | 0.481238 |
Target: 5'- cUGCUggucgGCaCgCauCCGGCCuACGCCGCCg -3' miRNA: 3'- -ACGGa----CG-GgGgcGGCCGG-UGUGGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 168281 | 0.66 | 0.472499 |
Target: 5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3' miRNA: 3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 167349 | 0.66 | 0.472499 |
Target: 5'- cGCUcgGCUgCaCGCgCGGCgGCGCCgGCCg -3' miRNA: 3'- aCGGa-CGGgG-GCG-GCCGgUGUGG-CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 141784 | 0.66 | 0.472499 |
Target: 5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3' miRNA: 3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 144862 | 0.66 | 0.472499 |
Target: 5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3' miRNA: 3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 147940 | 0.66 | 0.472499 |
Target: 5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3' miRNA: 3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 151018 | 0.66 | 0.472499 |
Target: 5'- cUGCCgggGUCCCUccgGCCGGCCugGuggacCCgagagGCCg -3' miRNA: 3'- -ACGGa--CGGGGG---CGGCCGGugU-----GG-----CGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 75602 | 0.66 | 0.472499 |
Target: 5'- cGCCuacUGCCCCa-CCGuCUACAgCGCCu -3' miRNA: 3'- aCGG---ACGGGGgcGGCcGGUGUgGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 80671 | 0.66 | 0.472499 |
Target: 5'- gGCCUcuCCCUCGgCuGCCuccucCACCGCCu -3' miRNA: 3'- aCGGAc-GGGGGCgGcCGGu----GUGGCGG- -5' |
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28727 | 5' | -66.7 | NC_006146.1 | + | 123244 | 0.66 | 0.472499 |
Target: 5'- -cCCUGgCCgCCGCgcugGGCCGgGCCGCg -3' miRNA: 3'- acGGACgGG-GGCGg---CCGGUgUGGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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