Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28732 | 3' | -59.3 | NC_006146.1 | + | 123352 | 0.66 | 0.831418 |
Target: 5'- aCGGUUGuaGGCcgcgaggaggACCGAGgcGG-CGCCc -3' miRNA: 3'- -GCCGACggCCG----------UGGCUCuaCCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 114285 | 0.66 | 0.823282 |
Target: 5'- uGGCUGCCacuauGGaCGCCGGcGA-GGagACCg -3' miRNA: 3'- gCCGACGG-----CC-GUGGCU-CUaCCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 43628 | 0.66 | 0.823282 |
Target: 5'- aGGgaGUgGGCGgCGGGGcgUGGcCGCCu -3' miRNA: 3'- gCCgaCGgCCGUgGCUCU--ACCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 58967 | 0.66 | 0.823282 |
Target: 5'- -uGCgGCCGGUAUaauGAUGGcCACCa -3' miRNA: 3'- gcCGaCGGCCGUGgcuCUACCaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 68812 | 0.66 | 0.823282 |
Target: 5'- uGGCcGUgagCGGCAUCGAGAUGGaCGa- -3' miRNA: 3'- gCCGaCG---GCCGUGGCUCUACCaGUgg -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 114549 | 0.66 | 0.823282 |
Target: 5'- uGGCguagGuCUGGC-CCGGGAcaaucuUGGUCAgCa -3' miRNA: 3'- gCCGa---C-GGCCGuGGCUCU------ACCAGUgG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 2477 | 0.66 | 0.818322 |
Target: 5'- gCGGUgugGCCGGCgggggcaggcagcugGCCGAcgagcuGAUGauaguGUCGCCg -3' miRNA: 3'- -GCCGa--CGGCCG---------------UGGCU------CUAC-----CAGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 156322 | 0.66 | 0.814983 |
Target: 5'- aGGC-GCgGGU-CCGGGAUGGggcucaCGCCc -3' miRNA: 3'- gCCGaCGgCCGuGGCUCUACCa-----GUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 71894 | 0.66 | 0.814983 |
Target: 5'- gGGCUGgUGGCGuuaGGGGUGGUggaCACUg -3' miRNA: 3'- gCCGACgGCCGUgg-CUCUACCA---GUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 51908 | 0.66 | 0.814983 |
Target: 5'- uCGGCggggGCCuccgaGGCACCGAcgggcggccccGGUgcGGUCugCg -3' miRNA: 3'- -GCCGa---CGG-----CCGUGGCU-----------CUA--CCAGugG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 71930 | 0.66 | 0.814983 |
Target: 5'- gGGCUGgUGGCGuuaGGGGUGGUggaCACUg -3' miRNA: 3'- gCCGACgGCCGUgg-CUCUACCA---GUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 126588 | 0.66 | 0.814145 |
Target: 5'- cCGGCUGCCacGGCcccagcccccacuACCGGuuuggcGGUGGUCGgUg -3' miRNA: 3'- -GCCGACGG--CCG-------------UGGCU------CUACCAGUgG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 117234 | 0.66 | 0.806531 |
Target: 5'- gGGCUuccuggaaagcgGCCGGgGCCaGGggGGUCGgCa -3' miRNA: 3'- gCCGA------------CGGCCgUGGcUCuaCCAGUgG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 10533 | 0.66 | 0.806531 |
Target: 5'- gCGGcCUGCCaagGGCGCUGAGA----CGCCa -3' miRNA: 3'- -GCC-GACGG---CCGUGGCUCUaccaGUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 59691 | 0.66 | 0.806531 |
Target: 5'- gCGGCaaUGCCGGUGCCGgAGGcggagguguuguUGGUguagGCCg -3' miRNA: 3'- -GCCG--ACGGCCGUGGC-UCU------------ACCAg---UGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 137690 | 0.66 | 0.806531 |
Target: 5'- cCGGCUGCCccggaGCACCaGGAgcacccGGagGCCa -3' miRNA: 3'- -GCCGACGGc----CGUGGcUCUa-----CCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 33019 | 0.66 | 0.805677 |
Target: 5'- aCGGggaccccCUGCCGGC-CCGGGgcGGg-GCCc -3' miRNA: 3'- -GCC-------GACGGCCGuGGCUCuaCCagUGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 150875 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 147797 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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28732 | 3' | -59.3 | NC_006146.1 | + | 144719 | 0.66 | 0.797931 |
Target: 5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3' miRNA: 3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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