miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28732 3' -59.3 NC_006146.1 + 123352 0.66 0.831418
Target:  5'- aCGGUUGuaGGCcgcgaggaggACCGAGgcGG-CGCCc -3'
miRNA:   3'- -GCCGACggCCG----------UGGCUCuaCCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 58967 0.66 0.823282
Target:  5'- -uGCgGCCGGUAUaauGAUGGcCACCa -3'
miRNA:   3'- gcCGaCGGCCGUGgcuCUACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 114549 0.66 0.823282
Target:  5'- uGGCguagGuCUGGC-CCGGGAcaaucuUGGUCAgCa -3'
miRNA:   3'- gCCGa---C-GGCCGuGGCUCU------ACCAGUgG- -5'
28732 3' -59.3 NC_006146.1 + 68812 0.66 0.823282
Target:  5'- uGGCcGUgagCGGCAUCGAGAUGGaCGa- -3'
miRNA:   3'- gCCGaCG---GCCGUGGCUCUACCaGUgg -5'
28732 3' -59.3 NC_006146.1 + 114285 0.66 0.823282
Target:  5'- uGGCUGCCacuauGGaCGCCGGcGA-GGagACCg -3'
miRNA:   3'- gCCGACGG-----CC-GUGGCU-CUaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 43628 0.66 0.823282
Target:  5'- aGGgaGUgGGCGgCGGGGcgUGGcCGCCu -3'
miRNA:   3'- gCCgaCGgCCGUgGCUCU--ACCaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 2477 0.66 0.818322
Target:  5'- gCGGUgugGCCGGCgggggcaggcagcugGCCGAcgagcuGAUGauaguGUCGCCg -3'
miRNA:   3'- -GCCGa--CGGCCG---------------UGGCU------CUAC-----CAGUGG- -5'
28732 3' -59.3 NC_006146.1 + 156322 0.66 0.814983
Target:  5'- aGGC-GCgGGU-CCGGGAUGGggcucaCGCCc -3'
miRNA:   3'- gCCGaCGgCCGuGGCUCUACCa-----GUGG- -5'
28732 3' -59.3 NC_006146.1 + 71894 0.66 0.814983
Target:  5'- gGGCUGgUGGCGuuaGGGGUGGUggaCACUg -3'
miRNA:   3'- gCCGACgGCCGUgg-CUCUACCA---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 71930 0.66 0.814983
Target:  5'- gGGCUGgUGGCGuuaGGGGUGGUggaCACUg -3'
miRNA:   3'- gCCGACgGCCGUgg-CUCUACCA---GUGG- -5'
28732 3' -59.3 NC_006146.1 + 51908 0.66 0.814983
Target:  5'- uCGGCggggGCCuccgaGGCACCGAcgggcggccccGGUgcGGUCugCg -3'
miRNA:   3'- -GCCGa---CGG-----CCGUGGCU-----------CUA--CCAGugG- -5'
28732 3' -59.3 NC_006146.1 + 126588 0.66 0.814145
Target:  5'- cCGGCUGCCacGGCcccagcccccacuACCGGuuuggcGGUGGUCGgUg -3'
miRNA:   3'- -GCCGACGG--CCG-------------UGGCU------CUACCAGUgG- -5'
28732 3' -59.3 NC_006146.1 + 117234 0.66 0.806531
Target:  5'- gGGCUuccuggaaagcgGCCGGgGCCaGGggGGUCGgCa -3'
miRNA:   3'- gCCGA------------CGGCCgUGGcUCuaCCAGUgG- -5'
28732 3' -59.3 NC_006146.1 + 10533 0.66 0.806531
Target:  5'- gCGGcCUGCCaagGGCGCUGAGA----CGCCa -3'
miRNA:   3'- -GCC-GACGG---CCGUGGCUCUaccaGUGG- -5'
28732 3' -59.3 NC_006146.1 + 59691 0.66 0.806531
Target:  5'- gCGGCaaUGCCGGUGCCGgAGGcggagguguuguUGGUguagGCCg -3'
miRNA:   3'- -GCCG--ACGGCCGUGGC-UCU------------ACCAg---UGG- -5'
28732 3' -59.3 NC_006146.1 + 137690 0.66 0.806531
Target:  5'- cCGGCUGCCccggaGCACCaGGAgcacccGGagGCCa -3'
miRNA:   3'- -GCCGACGGc----CGUGGcUCUa-----CCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 33019 0.66 0.805677
Target:  5'- aCGGggaccccCUGCCGGC-CCGGGgcGGg-GCCc -3'
miRNA:   3'- -GCC-------GACGGCCGuGGCUCuaCCagUGG- -5'
28732 3' -59.3 NC_006146.1 + 147797 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 141642 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5'
28732 3' -59.3 NC_006146.1 + 157031 0.66 0.797931
Target:  5'- gCGGCUGCgGGggacgcuggcaCACCGGGccgccggGGUC-CCu -3'
miRNA:   3'- -GCCGACGgCC-----------GUGGCUCua-----CCAGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.