miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28738 5' -57 NC_006146.1 + 44770 0.66 0.891112
Target:  5'- gGCCCGGCgGGCGGggaacccagGCcggggAUCUg -3'
miRNA:   3'- aCGGGCCGgCCGUCauaca----CGa----UAGG- -5'
28738 5' -57 NC_006146.1 + 54037 0.66 0.88708
Target:  5'- cGCCUGGCCGGgcCGG-AUGUGgUGg-- -3'
miRNA:   3'- aCGGGCCGGCC--GUCaUACACgAUagg -5'
28738 5' -57 NC_006146.1 + 51744 0.66 0.88708
Target:  5'- cGCCCcgaGGUgGGCuucuUGUGcggGCUGUCCu -3'
miRNA:   3'- aCGGG---CCGgCCGuc--AUACa--CGAUAGG- -5'
28738 5' -57 NC_006146.1 + 41353 0.66 0.88708
Target:  5'- gGCCCagGGCCuGGCGGUgGUGgccgugGCUcuGUCUc -3'
miRNA:   3'- aCGGG--CCGG-CCGUCA-UACa-----CGA--UAGG- -5'
28738 5' -57 NC_006146.1 + 64026 0.66 0.88708
Target:  5'- aGgCgGGCCGGCuuGUGcuUGUaCUGUCCc -3'
miRNA:   3'- aCgGgCCGGCCGu-CAU--ACAcGAUAGG- -5'
28738 5' -57 NC_006146.1 + 23076 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 26154 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 60101 0.66 0.880184
Target:  5'- cGCCgGGCCGGUuggcGUucUGUGCaaggggCCg -3'
miRNA:   3'- aCGGgCCGGCCGu---CAu-ACACGaua---GG- -5'
28738 5' -57 NC_006146.1 + 29232 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 13843 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 19998 0.66 0.880184
Target:  5'- aGgCCGGCCggagggaccccGGCGGcccgGUGUGCcagcGUCCc -3'
miRNA:   3'- aCgGGCCGG-----------CCGUCa---UACACGa---UAGG- -5'
28738 5' -57 NC_006146.1 + 61582 0.66 0.880184
Target:  5'- gGCUCGGCCGuGCAGcag--GCU-UCCc -3'
miRNA:   3'- aCGGGCCGGC-CGUCauacaCGAuAGG- -5'
28738 5' -57 NC_006146.1 + 58151 0.66 0.880184
Target:  5'- cGCCUGGCCGGCuuc---UGCg--CCu -3'
miRNA:   3'- aCGGGCCGGCCGucauacACGauaGG- -5'
28738 5' -57 NC_006146.1 + 77963 0.66 0.880184
Target:  5'- gGCCgGaGCCGGUGGccuuggagGUGCcgGUCCu -3'
miRNA:   3'- aCGGgC-CGGCCGUCaua-----CACGa-UAGG- -5'
28738 5' -57 NC_006146.1 + 141968 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 145046 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 148124 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 151202 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 154280 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5'
28738 5' -57 NC_006146.1 + 157358 0.66 0.880184
Target:  5'- gGCCgGGCgGGCGGggacgggGcUGCUcggGUCCc -3'
miRNA:   3'- aCGGgCCGgCCGUCaua----C-ACGA---UAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.