Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28757 | 5' | -53.8 | NC_006146.1 | + | 136662 | 0.7 | 0.826589 |
Target: 5'- cGGCCCg--GC-GUCCUUgcgGCGGCCu -3' miRNA: 3'- -CUGGGagaUGuCGGGAAaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 132222 | 0.72 | 0.752873 |
Target: 5'- aGGCCUUUaagGCAGCUCUc---GCGGCCg -3' miRNA: 3'- -CUGGGAGa--UGUCGGGAaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 131060 | 0.74 | 0.641083 |
Target: 5'- aGCCCcCgcCGGCCCacugUGCGGCCg -3' miRNA: 3'- cUGGGaGauGUCGGGaaaaACGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 129327 | 0.66 | 0.95412 |
Target: 5'- --gCCUCggcCAGCCaguag-GCGGCCg -3' miRNA: 3'- cugGGAGau-GUCGGgaaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 128262 | 0.73 | 0.702938 |
Target: 5'- gGGCCCaCUACgugaGGCCCacggcgGCGGCCg -3' miRNA: 3'- -CUGGGaGAUG----UCGGGaaaaa-CGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 128228 | 0.66 | 0.96506 |
Target: 5'- --gCCUCagGCAGCCCaccgcggGCGaGCCg -3' miRNA: 3'- cugGGAGa-UGUCGGGaaaaa--CGC-CGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 128070 | 0.67 | 0.95001 |
Target: 5'- cGGCCCUCga-GGCCCUgauccUGGUCu -3' miRNA: 3'- -CUGGGAGaugUCGGGAaaaacGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 127553 | 0.7 | 0.815286 |
Target: 5'- -cCCCUgccacgggcugcgcCUGCuGGCCCUgg--GCGGCCg -3' miRNA: 3'- cuGGGA--------------GAUG-UCGGGAaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 127141 | 0.66 | 0.96093 |
Target: 5'- -cCCCUCUGCGGCCCacuccucucUGUccGCCg -3' miRNA: 3'- cuGGGAGAUGUCGGGaaaa-----ACGc-CGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 126636 | 0.68 | 0.925291 |
Target: 5'- ---gCUCUGCAGCCCUUUacccgcuguuauaUUGUagaauuuaagacGGCCa -3' miRNA: 3'- cuggGAGAUGUCGGGAAA-------------AACG------------CCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 125089 | 0.67 | 0.931162 |
Target: 5'- -gUCUUCgagGCGGCCgUggcgGCGGCCu -3' miRNA: 3'- cuGGGAGa--UGUCGGgAaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 123288 | 0.68 | 0.920267 |
Target: 5'- uGGCCCUau-CGGCgaucCCUg---GCGGCCg -3' miRNA: 3'- -CUGGGAgauGUCG----GGAaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 123128 | 0.66 | 0.96506 |
Target: 5'- gGGCUUUCagACGGCCCUg---GaGGCCg -3' miRNA: 3'- -CUGGGAGa-UGUCGGGAaaaaCgCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 122636 | 0.66 | 0.963035 |
Target: 5'- gGGCCCUCUuucgcGCcaggacggcggcgggGGCCCUccgcGCGGCg -3' miRNA: 3'- -CUGGGAGA-----UG---------------UCGGGAaaaaCGCCGg -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 120487 | 0.68 | 0.902087 |
Target: 5'- cGGCCUgcCUGCcGuCCCUg---GCGGCCg -3' miRNA: 3'- -CUGGGa-GAUGuC-GGGAaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 117368 | 0.67 | 0.945662 |
Target: 5'- aGCCC-CU-CGGUCCUc---GCGGCCu -3' miRNA: 3'- cUGGGaGAuGUCGGGAaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 116485 | 0.68 | 0.894876 |
Target: 5'- aGACCCUCUccaccgcggaggaGCGGCgCgaggagGCGGCa -3' miRNA: 3'- -CUGGGAGA-------------UGUCGgGaaaaa-CGCCGg -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 116027 | 0.69 | 0.866286 |
Target: 5'- gGACCCcgCUuacgcccGCAGCCCaUUUUUccCGGCCg -3' miRNA: 3'- -CUGGGa-GA-------UGUCGGG-AAAAAc-GCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 114714 | 0.72 | 0.723164 |
Target: 5'- aGACCCg----GGCCCUg---GCGGCCg -3' miRNA: 3'- -CUGGGagaugUCGGGAaaaaCGCCGG- -5' |
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28757 | 5' | -53.8 | NC_006146.1 | + | 114508 | 0.66 | 0.956473 |
Target: 5'- cACCCUCgcgaGCGGCCaCgcuuacccgGCGGCg -3' miRNA: 3'- cUGGGAGa---UGUCGG-Gaaaaa----CGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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