miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 5' -63.2 NC_006146.1 + 169184 0.66 0.628831
Target:  5'- -cGCCCgacUCCAGGCGGAgacagcagaaaCAgCAGaGCCUg -3'
miRNA:   3'- caCGGG---GGGUCCGCCU-----------GUaGUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 159263 0.66 0.628831
Target:  5'- gGUGCaacgCCgCCAcGCGGGCcUCGgGGCCCu -3'
miRNA:   3'- -CACGg---GG-GGUcCGCCUGuAGU-CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 155464 0.66 0.628831
Target:  5'- cUGCUgCgCCAGGCaGGACugcagcCGGGCCa -3'
miRNA:   3'- cACGGgG-GGUCCG-CCUGua----GUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 72555 0.66 0.628831
Target:  5'- uGUGUCUCCUggaccGGGaCGGGCcgCGcccGGCCCc -3'
miRNA:   3'- -CACGGGGGG-----UCC-GCCUGuaGU---CCGGG- -5'
28768 5' -63.2 NC_006146.1 + 104425 0.66 0.628831
Target:  5'- cUGCCgcauaCCUacaAGGUGGACAggggCGGcGCCCu -3'
miRNA:   3'- cACGGg----GGG---UCCGCCUGUa---GUC-CGGG- -5'
28768 5' -63.2 NC_006146.1 + 64689 0.66 0.628831
Target:  5'- --cUCCCCCA---GGACAcCAGGCCCu -3'
miRNA:   3'- cacGGGGGGUccgCCUGUaGUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 170396 0.66 0.627859
Target:  5'- -gGCCUCCCcugggggccucggGGGCGGAgGggggggUCccgcgGGGCCCg -3'
miRNA:   3'- caCGGGGGG-------------UCCGCCUgU------AG-----UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 167601 0.66 0.627859
Target:  5'- -gGCCUCCCcugggggccucggGGGCGGAgGggggggUCccgcgGGGCCCg -3'
miRNA:   3'- caCGGGGGG-------------UCCGCCUgU------AG-----UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 169465 0.66 0.627859
Target:  5'- -gGCCUCCCcugggggccucggGGGCGGAgGggggggUCccgcgGGGCCCg -3'
miRNA:   3'- caCGGGGGG-------------UCCGCCUgU------AG-----UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 168533 0.66 0.627859
Target:  5'- -gGCCUCCCcugggggccucggGGGCGGAgGggggggUCccgcgGGGCCCg -3'
miRNA:   3'- caCGGGGGG-------------UCCGCCUgU------AG-----UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 84485 0.66 0.622998
Target:  5'- cUGCCCCCCuaccgauucuGGCugugguguuuuccucGGACGUCGuGCCg -3'
miRNA:   3'- cACGGGGGGu---------CCG---------------CCUGUAGUcCGGg -5'
28768 5' -63.2 NC_006146.1 + 99700 0.66 0.61911
Target:  5'- -aGCCCCCggCGGGagugaGGAUcuUCAGGCUg -3'
miRNA:   3'- caCGGGGG--GUCCg----CCUGu-AGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 155339 0.66 0.61911
Target:  5'- cUGUCCuCCCAGGgaccCGaGACGa-AGGCCCg -3'
miRNA:   3'- cACGGG-GGGUCC----GC-CUGUagUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 97864 0.66 0.61911
Target:  5'- -cGCCgaCCCCGGGCcguGGAacgaGGGCCUg -3'
miRNA:   3'- caCGG--GGGGUCCG---CCUguagUCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 111140 0.66 0.61911
Target:  5'- ---aCCCCCAGGUGGcCGggcggCuGGCCUc -3'
miRNA:   3'- cacgGGGGGUCCGCCuGUa----GuCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 18971 0.66 0.61911
Target:  5'- -gGCCCCUagagaGGGCGG-CA--GGGCCg -3'
miRNA:   3'- caCGGGGGg----UCCGCCuGUagUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 124940 0.66 0.61911
Target:  5'- -aGCUgCCCCGGGCaGagaGCGUCgAGGUCCc -3'
miRNA:   3'- caCGG-GGGGUCCGcC---UGUAG-UCCGGG- -5'
28768 5' -63.2 NC_006146.1 + 127451 0.66 0.61911
Target:  5'- cUGCCgCUCCAgauguGGCGGcCcgCAGGCUa -3'
miRNA:   3'- cACGG-GGGGU-----CCGCCuGuaGUCCGGg -5'
28768 5' -63.2 NC_006146.1 + 123512 0.66 0.61911
Target:  5'- -gGCCacggucgaCCCCAGGCGGGUcgCGGGUg- -3'
miRNA:   3'- caCGG--------GGGGUCCGCCUGuaGUCCGgg -5'
28768 5' -63.2 NC_006146.1 + 114147 0.66 0.617166
Target:  5'- cGUGCUCCgcgaUCAGGCcccGGACGUCccgcgcgaauucGGCCCc -3'
miRNA:   3'- -CACGGGG----GGUCCG---CCUGUAGu-----------CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.