miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 132113 0.66 0.845842
Target:  5'- aCCCCGCAGGAcuuCCACaaGCaCUUGuucUGCg -3'
miRNA:   3'- gGGGGCGUUCU---GGUGgcCG-GAGU---ACG- -5'
28771 3' -59 NC_006146.1 + 50891 0.66 0.845842
Target:  5'- uCCUCCGUAGGuCCGaauCCGGCCgu-UGg -3'
miRNA:   3'- -GGGGGCGUUCuGGU---GGCCGGaguACg -5'
28771 3' -59 NC_006146.1 + 113187 0.66 0.845842
Target:  5'- aCCCCGUugauGACCA-CGGCCgggaugagaGUGUa -3'
miRNA:   3'- gGGGGCGuu--CUGGUgGCCGGag-------UACG- -5'
28771 3' -59 NC_006146.1 + 149986 0.66 0.845842
Target:  5'- -gCCUGCAGGuCgGCCGGaCUCAggGCc -3'
miRNA:   3'- ggGGGCGUUCuGgUGGCCgGAGUa-CG- -5'
28771 3' -59 NC_006146.1 + 45275 0.66 0.845842
Target:  5'- gUCCCCGC----UCACCaGCC-CAUGCc -3'
miRNA:   3'- -GGGGGCGuucuGGUGGcCGGaGUACG- -5'
28771 3' -59 NC_006146.1 + 46442 0.66 0.845842
Target:  5'- gCCCCCaGgAAGGCgGCggcguaGGCCggaugCGUGCc -3'
miRNA:   3'- -GGGGG-CgUUCUGgUGg-----CCGGa----GUACG- -5'
28771 3' -59 NC_006146.1 + 53885 0.66 0.845842
Target:  5'- gCCCCCGUAGGGCguaGCCcaGGUC-CAggGCc -3'
miRNA:   3'- -GGGGGCGUUCUGg--UGG--CCGGaGUa-CG- -5'
28771 3' -59 NC_006146.1 + 127578 0.66 0.845842
Target:  5'- gCCCUGggcggcCGAGGCCgcGCCGGCCggGUGa -3'
miRNA:   3'- gGGGGC------GUUCUGG--UGGCCGGagUACg -5'
28771 3' -59 NC_006146.1 + 11469 0.66 0.845842
Target:  5'- uUCCCCGCcucGACCAucagccacCCGGaCUCGgggGCc -3'
miRNA:   3'- -GGGGGCGuu-CUGGU--------GGCCgGAGUa--CG- -5'
28771 3' -59 NC_006146.1 + 13178 0.66 0.838013
Target:  5'- -gCCUGCccGGCCugcCCGGCCUCGcuccggGCg -3'
miRNA:   3'- ggGGGCGuuCUGGu--GGCCGGAGUa-----CG- -5'
28771 3' -59 NC_006146.1 + 58022 0.66 0.838013
Target:  5'- gCCUUCGCGcAGAgC-CCGGCCUaCGaGCg -3'
miRNA:   3'- -GGGGGCGU-UCUgGuGGCCGGA-GUaCG- -5'
28771 3' -59 NC_006146.1 + 22412 0.66 0.838013
Target:  5'- -gCCUGCccGGCCugcCCGGCCUCGcuccggGCg -3'
miRNA:   3'- ggGGGCGuuCUGGu--GGCCGGAGUa-----CG- -5'
28771 3' -59 NC_006146.1 + 110747 0.66 0.838013
Target:  5'- gCCCUGCc-GGCUAUCcugGGCUUUAUGCu -3'
miRNA:   3'- gGGGGCGuuCUGGUGG---CCGGAGUACG- -5'
28771 3' -59 NC_006146.1 + 115336 0.66 0.838013
Target:  5'- aCCCCGgacucggucauCGAGGCCuucCUGGCCggCGUGg -3'
miRNA:   3'- gGGGGC-----------GUUCUGGu--GGCCGGa-GUACg -5'
28771 3' -59 NC_006146.1 + 16256 0.66 0.838013
Target:  5'- -gCCUGCccGGCCugcCCGGCCUCGcuccggGCg -3'
miRNA:   3'- ggGGGCGuuCUGGu--GGCCGGAGUa-----CG- -5'
28771 3' -59 NC_006146.1 + 25490 0.66 0.838013
Target:  5'- -gCCUGCccGGCCugcCCGGCCUCGcuccggGCg -3'
miRNA:   3'- ggGGGCGuuCUGGu--GGCCGGAGUa-----CG- -5'
28771 3' -59 NC_006146.1 + 78433 0.66 0.838013
Target:  5'- uCCCaCCGCGAGACUuuagaaACaUGGCCaUCccgGCg -3'
miRNA:   3'- -GGG-GGCGUUCUGG------UG-GCCGG-AGua-CG- -5'
28771 3' -59 NC_006146.1 + 138042 0.66 0.838013
Target:  5'- aCCUCGC---GCCGCCcGCUUCAUGg -3'
miRNA:   3'- gGGGGCGuucUGGUGGcCGGAGUACg -5'
28771 3' -59 NC_006146.1 + 28568 0.66 0.838013
Target:  5'- -gCCUGCccGGCCugcCCGGCCUCGcuccggGCg -3'
miRNA:   3'- ggGGGCGuuCUGGu--GGCCGGAGUa-----CG- -5'
28771 3' -59 NC_006146.1 + 123988 0.66 0.838013
Target:  5'- gUCCCCGUgcGACCcccucaacCCGGCCUaCGUc- -3'
miRNA:   3'- -GGGGGCGuuCUGGu-------GGCCGGA-GUAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.