Results 1 - 20 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28773 | 3' | -51.4 | NC_006146.1 | + | 117909 | 0.66 | 0.993164 |
Target: 5'- gGCCAgaagaggGGCCUcgagACGCCCGCCcCg -3' miRNA: 3'- gCGGUagaua--UUGGA----UGUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 59534 | 0.66 | 0.993164 |
Target: 5'- gGCUcuucaauucccaGUUUGUcGCCcugAUGCCCACCUCg -3' miRNA: 3'- gCGG------------UAGAUAuUGGa--UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 84541 | 0.66 | 0.993164 |
Target: 5'- gCGCCGUggcagGUggUUggGCAUCCACCUCc -3' miRNA: 3'- -GCGGUAga---UAuuGGa-UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 126944 | 0.66 | 0.992131 |
Target: 5'- cCGCCAUCagGUAGCaUACACUaucccgCGCCUUu -3' miRNA: 3'- -GCGGUAGa-UAUUGgAUGUGG------GUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 14232 | 0.66 | 0.992131 |
Target: 5'- gGCCuUCUG--GCCgaguuggACGCCCuCCUCc -3' miRNA: 3'- gCGGuAGAUauUGGa------UGUGGGuGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 48242 | 0.66 | 0.992131 |
Target: 5'- uGCagaCUAUGACCUACA-UUACCUCc -3' miRNA: 3'- gCGguaGAUAUUGGAUGUgGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 67801 | 0.66 | 0.992131 |
Target: 5'- gGCCA-----GGCuCUGC-CCCGCCUCg -3' miRNA: 3'- gCGGUagauaUUG-GAUGuGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 47642 | 0.66 | 0.992131 |
Target: 5'- aGCCGUCUcUGGCCgcgGCccgGCCCAgCg- -3' miRNA: 3'- gCGGUAGAuAUUGGa--UG---UGGGUgGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 29854 | 0.66 | 0.992131 |
Target: 5'- -uCCAUuUUGUAGCCcuaGC-CCCACCUCu -3' miRNA: 3'- gcGGUA-GAUAUUGGa--UGuGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 143121 | 0.66 | 0.990977 |
Target: 5'- aGCCG---GUGACCUGagACCCACCc- -3' miRNA: 3'- gCGGUagaUAUUGGAUg-UGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 23178 | 0.66 | 0.990977 |
Target: 5'- gGCCcgCUAUuACCcagGC-CCCGCCg- -3' miRNA: 3'- gCGGuaGAUAuUGGa--UGuGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 102724 | 0.66 | 0.990977 |
Target: 5'- gCGCCcgCguccUGACgCUGCGCCUGCC-Cg -3' miRNA: 3'- -GCGGuaGau--AUUG-GAUGUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 92799 | 0.66 | 0.990606 |
Target: 5'- gGCUucccuGUCUuccgGGCCUcgcaauccuccaccACACCCACUUCg -3' miRNA: 3'- gCGG-----UAGAua--UUGGA--------------UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 71891 | 0.66 | 0.989828 |
Target: 5'- gGCCGUCacgcggacccuCCUGCGCgCgGCCUCu -3' miRNA: 3'- gCGGUAGauauu------GGAUGUG-GgUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 113836 | 0.66 | 0.989693 |
Target: 5'- gGCCAUCcgcgucaGGCCcccuCCCGCCUCa -3' miRNA: 3'- gCGGUAGaua----UUGGauguGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 122049 | 0.66 | 0.989693 |
Target: 5'- gGCCGaCg---GCUUcGCGCCCGCCUCc -3' miRNA: 3'- gCGGUaGauauUGGA-UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 136863 | 0.66 | 0.989693 |
Target: 5'- gGCCGgcaUAggccccggGACC-ACGCCCGCCUg -3' miRNA: 3'- gCGGUag-AUa-------UUGGaUGUGGGUGGAg -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 12762 | 0.66 | 0.989282 |
Target: 5'- aGCCcacCUGUGACCUGCcggaccuggacgcgGCCCugCa- -3' miRNA: 3'- gCGGua-GAUAUUGGAUG--------------UGGGugGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 111566 | 0.66 | 0.988272 |
Target: 5'- gGCuCAUCUAU-GCCgucaACACCgccaGCCUCu -3' miRNA: 3'- gCG-GUAGAUAuUGGa---UGUGGg---UGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 49393 | 0.67 | 0.986703 |
Target: 5'- uGCCGUUgu---CCUGCgucauGCCCACCgUCa -3' miRNA: 3'- gCGGUAGauauuGGAUG-----UGGGUGG-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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