miRNA display CGI


Results 1 - 20 of 277 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 5' -56.4 NC_006146.1 + 61839 0.66 0.930895
Target:  5'- -gGCAGUGGGGCuggugccgggacuccCggggCAGAGguuccacggggGCGCGCCc -3'
miRNA:   3'- ggCGUCGCCCCG---------------Ga---GUCUU-----------UGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 47407 0.66 0.928858
Target:  5'- aCCGUGGCcaGGGccaGCCUCAGcuccucCAUGCCg -3'
miRNA:   3'- -GGCGUCG--CCC---CGGAGUCuuu---GUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 111900 0.66 0.928858
Target:  5'- -gGCAGCGcGGGaggCAGAugUugGCCa -3'
miRNA:   3'- ggCGUCGC-CCCggaGUCUuuGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 126193 0.66 0.928858
Target:  5'- gCCGgcCAGCgGGGGCCaCGGccAC-CGCCg -3'
miRNA:   3'- -GGC--GUCG-CCCCGGaGUCuuUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 103103 0.66 0.928858
Target:  5'- uCCGaGGCGGGGC---AGAGcCugGCCg -3'
miRNA:   3'- -GGCgUCGCCCCGgagUCUUuGugUGG- -5'
28773 5' -56.4 NC_006146.1 + 168903 0.66 0.928858
Target:  5'- cCCGCAGCGcgacugucagcaGGuuCUCGGAGACGaggggGCCc -3'
miRNA:   3'- -GGCGUCGC------------CCcgGAGUCUUUGUg----UGG- -5'
28773 5' -56.4 NC_006146.1 + 130738 0.66 0.928858
Target:  5'- -gGCGGCGGGcucuuCCcCGGAGAagACGCCg -3'
miRNA:   3'- ggCGUCGCCCc----GGaGUCUUUg-UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 114759 0.66 0.926785
Target:  5'- gCCGCGGgGaGGGCuCUCGGucucggggcccgcGGC-CACCu -3'
miRNA:   3'- -GGCGUCgC-CCCG-GAGUCu------------UUGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 162338 0.66 0.926785
Target:  5'- gCUGCAGCccGGGcugcagcuaugagcGCCUUGGAGauggagccccuugGCGCGCCc -3'
miRNA:   3'- -GGCGUCG--CCC--------------CGGAGUCUU-------------UGUGUGG- -5'
28773 5' -56.4 NC_006146.1 + 170392 0.66 0.923605
Target:  5'- gCCG-GGCcuccccugGGGGCCUCGGggGCGgAg- -3'
miRNA:   3'- -GGCgUCG--------CCCCGGAGUCuuUGUgUgg -5'
28773 5' -56.4 NC_006146.1 + 68933 0.66 0.923605
Target:  5'- aCCGgGGCcuGGGCC-CAGGAGaucucCGCCg -3'
miRNA:   3'- -GGCgUCGc-CCCGGaGUCUUUgu---GUGG- -5'
28773 5' -56.4 NC_006146.1 + 169461 0.66 0.923605
Target:  5'- gCCG-GGCcuccccugGGGGCCUCGGggGCGgAg- -3'
miRNA:   3'- -GGCgUCG--------CCCCGGAGUCuuUGUgUgg -5'
28773 5' -56.4 NC_006146.1 + 167597 0.66 0.923605
Target:  5'- gCCG-GGCcuccccugGGGGCCUCGGggGCGgAg- -3'
miRNA:   3'- -GGCgUCG--------CCCCGGAGUCuuUGUgUgg -5'
28773 5' -56.4 NC_006146.1 + 130297 0.66 0.923605
Target:  5'- -aGCAGCGGcGGCaugCGGAGguucgGC-CGCCc -3'
miRNA:   3'- ggCGUCGCC-CCGga-GUCUU-----UGuGUGG- -5'
28773 5' -56.4 NC_006146.1 + 52904 0.66 0.923605
Target:  5'- cCCGCAuggucuGCGuGGCCcccCGGggGCGCugGCCu -3'
miRNA:   3'- -GGCGU------CGCcCCGGa--GUCuuUGUG--UGG- -5'
28773 5' -56.4 NC_006146.1 + 168529 0.66 0.923605
Target:  5'- gCCG-GGCcuccccugGGGGCCUCGGggGCGgAg- -3'
miRNA:   3'- -GGCgUCG--------CCCCGGAGUCuuUGUgUgg -5'
28773 5' -56.4 NC_006146.1 + 62320 0.66 0.923605
Target:  5'- gCC-CAGCGaGGCC--AGAGACGcCGCCg -3'
miRNA:   3'- -GGcGUCGCcCCGGagUCUUUGU-GUGG- -5'
28773 5' -56.4 NC_006146.1 + 45931 0.66 0.923605
Target:  5'- gCCGUAGguggaCGGGGUCUCucuGGGGACcucgACGCUc -3'
miRNA:   3'- -GGCGUC-----GCCCCGGAG---UCUUUG----UGUGG- -5'
28773 5' -56.4 NC_006146.1 + 117247 0.66 0.923067
Target:  5'- -aGCGGcCGGGGCCagGGGggucGGCAgguucccCACCa -3'
miRNA:   3'- ggCGUC-GCCCCGGagUCU----UUGU-------GUGG- -5'
28773 5' -56.4 NC_006146.1 + 60884 0.66 0.923067
Target:  5'- cCUGCAGaccggccUGGGGCCcaguggaucCAGGAGCuguuucGCACCg -3'
miRNA:   3'- -GGCGUC-------GCCCCGGa--------GUCUUUG------UGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.