miRNA display CGI


Results 1 - 20 of 225 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 3' -65.9 NC_006146.1 + 116092 0.66 0.547789
Target:  5'- cCCUCCGCCgGguCCUCuccaacGAGCUGCCcaagGCg -3'
miRNA:   3'- cGGAGGCGGgC--GGAGc-----CUCGGCGG----CG- -5'
28776 3' -65.9 NC_006146.1 + 99901 0.66 0.547789
Target:  5'- cGCCUCUGCCC-CC-CGGgcgcaagagcgGGCUccggGUCGCa -3'
miRNA:   3'- -CGGAGGCGGGcGGaGCC-----------UCGG----CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 46076 0.66 0.547789
Target:  5'- aGCUgCUGCaggGCCUCGGGGgcgaagcaCCGUCGCg -3'
miRNA:   3'- -CGGaGGCGgg-CGGAGCCUC--------GGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 128019 0.66 0.539519
Target:  5'- aGCgUCgGCCCGCaaaguuaaauacaGGAGCUGCCu- -3'
miRNA:   3'- -CGgAGgCGGGCGgag----------CCUCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 43400 0.66 0.538603
Target:  5'- uGCCUCUGCCCcgGCUgCGacccCCGCCGUc -3'
miRNA:   3'- -CGGAGGCGGG--CGGaGCcuc-GGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 67732 0.66 0.538603
Target:  5'- gGCCucggUCCGCuCCGCCcagaCGGAGgaGCCa- -3'
miRNA:   3'- -CGG----AGGCG-GGCGGa---GCCUCggCGGcg -5'
28776 3' -65.9 NC_006146.1 + 70734 0.66 0.538603
Target:  5'- gGCUUaUUGCCCcCCUcgCGGAcGCCGCCGa -3'
miRNA:   3'- -CGGA-GGCGGGcGGA--GCCU-CGGCGGCg -5'
28776 3' -65.9 NC_006146.1 + 71982 0.66 0.538603
Target:  5'- aCCUCCGCCCaucCUUUGGAGgagaccCUGgCGCg -3'
miRNA:   3'- cGGAGGCGGGc--GGAGCCUC------GGCgGCG- -5'
28776 3' -65.9 NC_006146.1 + 129841 0.66 0.537687
Target:  5'- cGCCcCCGUCCGagcgagcCCUCGGAaGCUGUCc- -3'
miRNA:   3'- -CGGaGGCGGGC-------GGAGCCU-CGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 44718 0.66 0.529471
Target:  5'- gGCCcCCGCUgGCCggccugaugCGGuGGCCGCgGg -3'
miRNA:   3'- -CGGaGGCGGgCGGa--------GCC-UCGGCGgCg -5'
28776 3' -65.9 NC_006146.1 + 147354 0.66 0.529471
Target:  5'- aUCUuuGCgCGUgUCGGcGGCCGCCa- -3'
miRNA:   3'- cGGAggCGgGCGgAGCC-UCGGCGGcg -5'
28776 3' -65.9 NC_006146.1 + 129333 0.66 0.529471
Target:  5'- uCCUCgCGCagCGCg-CGGAGCgGCCGg -3'
miRNA:   3'- cGGAG-GCGg-GCGgaGCCUCGgCGGCg -5'
28776 3' -65.9 NC_006146.1 + 54031 0.66 0.528561
Target:  5'- cGCCUCCggagggcgGCCaUGUCggcggUGGucagggcccaccuGGCCGCCGCg -3'
miRNA:   3'- -CGGAGG--------CGG-GCGGa----GCC-------------UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135958 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 163199 0.66 0.520396
Target:  5'- gGCUUCUGCCC-CUcagaGGAGCCgggcagGCCGUa -3'
miRNA:   3'- -CGGAGGCGGGcGGag--CCUCGG------CGGCG- -5'
28776 3' -65.9 NC_006146.1 + 136051 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135401 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135494 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 135865 0.66 0.520396
Target:  5'- uGCC-CCGCuCCGgCggggggUGGccgGGCCGCUGCc -3'
miRNA:   3'- -CGGaGGCG-GGCgGa-----GCC---UCGGCGGCG- -5'
28776 3' -65.9 NC_006146.1 + 110280 0.66 0.520396
Target:  5'- aGCCccgUCUGCCaugaugGCCUCGGcguaGGCguucauCGCCGCc -3'
miRNA:   3'- -CGG---AGGCGGg-----CGGAGCC----UCG------GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.