miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28778 5' -63.5 NC_006146.1 + 170175 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 169244 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 168312 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 167380 0.65 0.5883
Target:  5'- gGGGCUGAgggggcucccgagGGCggGGCCggGGCCugGCGGg -3'
miRNA:   3'- -CUCGACU-------------CCGa-CCGGgaCCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 85910 0.66 0.579525
Target:  5'- aGAGCcgcGGGGCUuuacccuggGGCCUggaUGGCCuGCGGg -3'
miRNA:   3'- -CUCGa--CUCCGA---------CCGGG---ACCGG-UGCCa -5'
28778 5' -63.5 NC_006146.1 + 5214 0.66 0.579525
Target:  5'- gGAGCUaGGGGUgcaGGUCCUugccGGCCuCGGg -3'
miRNA:   3'- -CUCGA-CUCCGa--CCGGGA----CCGGuGCCa -5'
28778 5' -63.5 NC_006146.1 + 86308 0.66 0.579525
Target:  5'- uGGCUGgaguAGGa-GGCCCUGGgCAgGGUc -3'
miRNA:   3'- cUCGAC----UCCgaCCGGGACCgGUgCCA- -5'
28778 5' -63.5 NC_006146.1 + 132075 0.66 0.569809
Target:  5'- uGAGCUGccccAGGCUcaGGgCCUGGCUGCa-- -3'
miRNA:   3'- -CUCGAC----UCCGA--CCgGGACCGGUGcca -5'
28778 5' -63.5 NC_006146.1 + 68857 0.66 0.569809
Target:  5'- -uGCUGgcaagcAGGCUGGCgacagCCUGGCCcugAUGGa -3'
miRNA:   3'- cuCGAC------UCCGACCG-----GGACCGG---UGCCa -5'
28778 5' -63.5 NC_006146.1 + 98302 0.66 0.569809
Target:  5'- gGGGCUGAgGGCgugcuccgUGGCCguCUGG-CACGGg -3'
miRNA:   3'- -CUCGACU-CCG--------ACCGG--GACCgGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 32979 0.66 0.563999
Target:  5'- -cGCUGGgucgcGGCUgcccccggaacccccGGCCCUGuCCACGGg -3'
miRNA:   3'- cuCGACU-----CCGA---------------CCGGGACcGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 15417 0.66 0.560133
Target:  5'- uGGCcucagaGGGGCUGGCCC-GGCUGCaGUc -3'
miRNA:   3'- cUCGa-----CUCCGACCGGGaCCGGUGcCA- -5'
28778 5' -63.5 NC_006146.1 + 145191 0.66 0.560133
Target:  5'- uAGCUugaGGGGCUGGCCC-GGCUuccacuccugAgGGUa -3'
miRNA:   3'- cUCGA---CUCCGACCGGGaCCGG----------UgCCA- -5'
28778 5' -63.5 NC_006146.1 + 103090 0.66 0.560133
Target:  5'- gGAGCUguuuacuuccGAGGCggGGCagagCCUGGCCGCcGUc -3'
miRNA:   3'- -CUCGA----------CUCCGa-CCG----GGACCGGUGcCA- -5'
28778 5' -63.5 NC_006146.1 + 88595 0.66 0.560133
Target:  5'- gGGGCUGGGGCU-GUUgUGGCUGCGa- -3'
miRNA:   3'- -CUCGACUCCGAcCGGgACCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 129049 0.66 0.550504
Target:  5'- ----cGAGGCcccGGuagcCCCUGGCCACGGc -3'
miRNA:   3'- cucgaCUCCGa--CC----GGGACCGGUGCCa -5'
28778 5' -63.5 NC_006146.1 + 101962 0.66 0.550504
Target:  5'- uGGCUaGGGGCUccgGGCUCUGGCUAgaGGc -3'
miRNA:   3'- cUCGA-CUCCGA---CCGGGACCGGUg-CCa -5'
28778 5' -63.5 NC_006146.1 + 146845 0.66 0.550504
Target:  5'- aGAGCccGGGcCUGGCUCggGGCCGCGu- -3'
miRNA:   3'- -CUCGacUCC-GACCGGGa-CCGGUGCca -5'
28778 5' -63.5 NC_006146.1 + 129270 0.66 0.550504
Target:  5'- aGGGaugUGGGGCUGGUCUgcgcccgGGCCcaGCGGa -3'
miRNA:   3'- -CUCg--ACUCCGACCGGGa------CCGG--UGCCa -5'
28778 5' -63.5 NC_006146.1 + 146538 0.66 0.540925
Target:  5'- --cCUGGaGCUGGCCCUGcGCCACu-- -3'
miRNA:   3'- cucGACUcCGACCGGGAC-CGGUGcca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.