miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28786 3' -55.5 NC_006146.1 + 122741 0.66 0.946777
Target:  5'- cGGaUCUGGAGgccccuacgagggguACgaGCGGGgGCUgGCCg -3'
miRNA:   3'- -CC-AGACCUU---------------UGgaCGUCCaCGGgUGG- -5'
28786 3' -55.5 NC_006146.1 + 88497 0.66 0.946777
Target:  5'- aGGUCUgcaaaaauugugguuGGAuuCCUGCGGcUGUCCagaguGCCa -3'
miRNA:   3'- -CCAGA---------------CCUuuGGACGUCcACGGG-----UGG- -5'
28786 3' -55.5 NC_006146.1 + 96825 0.66 0.945033
Target:  5'- uGGUggGGAcgGGCggGCAGGUuggGCCCGCUu -3'
miRNA:   3'- -CCAgaCCU--UUGgaCGUCCA---CGGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 40346 0.66 0.945033
Target:  5'- uGGUaggcgUGGGGAUCUGCGGcGgagaagGCCC-CCu -3'
miRNA:   3'- -CCAg----ACCUUUGGACGUC-Ca-----CGGGuGG- -5'
28786 3' -55.5 NC_006146.1 + 77919 0.66 0.945033
Target:  5'- gGGgcgGGcgGCCUcGCAGGUGCCggggguCGCUg -3'
miRNA:   3'- -CCagaCCuuUGGA-CGUCCACGG------GUGG- -5'
28786 3' -55.5 NC_006146.1 + 95692 0.66 0.94051
Target:  5'- -cUUUGGGAACCUGUgacGGUG-CUGCCu -3'
miRNA:   3'- ccAGACCUUUGGACGu--CCACgGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 41680 0.66 0.94051
Target:  5'- --aCUGGAAACCgcacgaauCGGGUGCUgGCg -3'
miRNA:   3'- ccaGACCUUUGGac------GUCCACGGgUGg -5'
28786 3' -55.5 NC_006146.1 + 117255 0.66 0.94051
Target:  5'- gGGcCagGGGggUCgGCAGGUucCCCACCa -3'
miRNA:   3'- -CCaGa-CCUuuGGaCGUCCAc-GGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 152073 0.66 0.94051
Target:  5'- gGGUCUGGAAGCaCUugggaaugagacGCAGGUacuCCUugUc -3'
miRNA:   3'- -CCAGACCUUUG-GA------------CGUCCAc--GGGugG- -5'
28786 3' -55.5 NC_006146.1 + 164431 0.66 0.937685
Target:  5'- -uUCUGGAucCCUGUGGGgGacuugugugagaaacCCCGCCg -3'
miRNA:   3'- ccAGACCUuuGGACGUCCaC---------------GGGUGG- -5'
28786 3' -55.5 NC_006146.1 + 59906 0.66 0.935755
Target:  5'- --gCUGGccAACCUGCuGGUGCgCgGCUa -3'
miRNA:   3'- ccaGACCu-UUGGACGuCCACG-GgUGG- -5'
28786 3' -55.5 NC_006146.1 + 69635 0.66 0.935755
Target:  5'- gGGUaCUGGggGCg-GCuaauGG-GCCCGCg -3'
miRNA:   3'- -CCA-GACCuuUGgaCGu---CCaCGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 148072 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 49606 0.66 0.935754
Target:  5'- uGGUgUGGAacacAAUCUguccagaggGCAGGUGCaCgGCCc -3'
miRNA:   3'- -CCAgACCU----UUGGA---------CGUCCACG-GgUGG- -5'
28786 3' -55.5 NC_006146.1 + 100019 0.66 0.935754
Target:  5'- cGUCgGGAGGCg-GCGGG-GUCCGCg -3'
miRNA:   3'- cCAGaCCUUUGgaCGUCCaCGGGUGg -5'
28786 3' -55.5 NC_006146.1 + 157306 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 154228 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 71598 0.66 0.935754
Target:  5'- aGGUCUGGcccuGACCagGCGGGagauuaacCCCAgCCa -3'
miRNA:   3'- -CCAGACCu---UUGGa-CGUCCac------GGGU-GG- -5'
28786 3' -55.5 NC_006146.1 + 141916 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5'
28786 3' -55.5 NC_006146.1 + 144994 0.66 0.935754
Target:  5'- gGGUCUGGA---CUGgAGG-GCCCugggagGCCc -3'
miRNA:   3'- -CCAGACCUuugGACgUCCaCGGG------UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.