miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28812 5' -58.6 NC_006146.1 + 119301 0.66 0.800731
Target:  5'- gGCu-GUCCcGACGCaACCGGCCUCAGu -3'
miRNA:   3'- -UGuuCGGGaUUGCGgUGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 59150 0.66 0.800731
Target:  5'- cGCuGGCCCgccucaggGACGCCACCcaguguGCCaCCu- -3'
miRNA:   3'- -UGuUCGGGa-------UUGCGGUGGu-----CGG-GGuu -5'
28812 5' -58.6 NC_006146.1 + 106585 0.66 0.800731
Target:  5'- -aGAGCUuaCUGcCGCCAguaCGGCCCCAGg -3'
miRNA:   3'- ugUUCGG--GAUuGCGGUg--GUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 108469 0.66 0.800731
Target:  5'- cACuAGCCCgGAgGCCgcuucaGCCAGCCCa-- -3'
miRNA:   3'- -UGuUCGGGaUUgCGG------UGGUCGGGguu -5'
28812 5' -58.6 NC_006146.1 + 159020 0.66 0.800731
Target:  5'- cCGGGCCCcguUggUGCCagucaacgucggGCCcGCCCCAAg -3'
miRNA:   3'- uGUUCGGG---AuuGCGG------------UGGuCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 9266 0.66 0.800731
Target:  5'- cAC-AGCaaaCUAAgGCCACCAGCUCa-- -3'
miRNA:   3'- -UGuUCGg--GAUUgCGGUGGUCGGGguu -5'
28812 5' -58.6 NC_006146.1 + 128006 0.66 0.800731
Target:  5'- gACAgacGGCCCUAGCGUC---GGCCCgCAAa -3'
miRNA:   3'- -UGU---UCGGGAUUGCGGuggUCGGG-GUU- -5'
28812 5' -58.6 NC_006146.1 + 151701 0.66 0.799837
Target:  5'- cCAGGCCCUGaggcGCGCCugcguagaaguagGCCuGCugCCCAAa -3'
miRNA:   3'- uGUUCGGGAU----UGCGG-------------UGGuCG--GGGUU- -5'
28812 5' -58.6 NC_006146.1 + 75788 0.66 0.798046
Target:  5'- -gGGGCUCUAcucgggcgucucggGCGCCGCCuucgaGGCCCUg- -3'
miRNA:   3'- ugUUCGGGAU--------------UGCGGUGG-----UCGGGGuu -5'
28812 5' -58.6 NC_006146.1 + 16013 0.66 0.79173
Target:  5'- -gAGGCCCUGGCcCCGCCcgguGGCCUUGGg -3'
miRNA:   3'- ugUUCGGGAUUGcGGUGG----UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 22169 0.66 0.79173
Target:  5'- -gAGGCCCUGGCcCCGCCcgguGGCCUUGGg -3'
miRNA:   3'- ugUUCGGGAUUGcGGUGG----UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 24944 0.66 0.79173
Target:  5'- cCAGGCCCcuuaGACcCgGCCAgGCCCCAu -3'
miRNA:   3'- uGUUCGGGa---UUGcGgUGGU-CGGGGUu -5'
28812 5' -58.6 NC_006146.1 + 12936 0.66 0.79173
Target:  5'- -gAGGCCCUGGCcCCGCCcgguGGCCUUGGg -3'
miRNA:   3'- ugUUCGGGAUUGcGGUGG----UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 19091 0.66 0.79173
Target:  5'- -gAGGCCCUGGCcCCGCCcgguGGCCUUGGg -3'
miRNA:   3'- ugUUCGGGAUUGcGGUGG----UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 25247 0.66 0.79173
Target:  5'- -gAGGCCCUGGCcCCGCCcgguGGCCUUGGg -3'
miRNA:   3'- ugUUCGGGAUUGcGGUGG----UCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 113682 0.66 0.79173
Target:  5'- uCGGGCCCgGGCccgGCCuCCGGCCCgGGg -3'
miRNA:   3'- uGUUCGGGaUUG---CGGuGGUCGGGgUU- -5'
28812 5' -58.6 NC_006146.1 + 131138 0.66 0.79173
Target:  5'- cCAAGCCUgacuccaaGCC-CCAGCCuCCAGc -3'
miRNA:   3'- uGUUCGGGauug----CGGuGGUCGG-GGUU- -5'
28812 5' -58.6 NC_006146.1 + 31768 0.66 0.79173
Target:  5'- aACAcuGCCCccaccuGCGCCaucggaGCCAGCUCCGGg -3'
miRNA:   3'- -UGUu-CGGGau----UGCGG------UGGUCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 80359 0.66 0.79173
Target:  5'- cCGGGCCCU-GCuCCACC-GCUCCGGg -3'
miRNA:   3'- uGUUCGGGAuUGcGGUGGuCGGGGUU- -5'
28812 5' -58.6 NC_006146.1 + 28325 0.66 0.79173
Target:  5'- -gAGGCCCUGGCcCCGCCcgguGGCCUUGGg -3'
miRNA:   3'- ugUUCGGGAUUGcGGUGG----UCGGGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.