miRNA display CGI


Results 1 - 20 of 167 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28844 3' -54.3 NC_006146.1 + 114726 0.66 0.972334
Target:  5'- uGGCgGCCGAGuaucGGCGCaUCCUcaaGGACGg -3'
miRNA:   3'- -CCGgUGGUUC----UUGCGcAGGGa--CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 5091 0.66 0.972334
Target:  5'- cGCgGCCAGGGACGCccCCCU-AGCc -3'
miRNA:   3'- cCGgUGGUUCUUGCGcaGGGAcUUGc -5'
28844 3' -54.3 NC_006146.1 + 128869 0.66 0.972334
Target:  5'- gGGCCACgAAGAggGgGCGgaggcgggCCC-GAACGc -3'
miRNA:   3'- -CCGGUGgUUCU--UgCGCa-------GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 138071 0.66 0.971502
Target:  5'- aGGCCGCCGcaAGGACGCcgggccggcuggggGUugugcaccCCCcGAGCGu -3'
miRNA:   3'- -CCGGUGGU--UCUUGCG--------------CA--------GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 34241 0.66 0.971502
Target:  5'- aGGCCGCCGcaAGGACGCcgggccggcuggggGUugugcaccCCCcGAGCGu -3'
miRNA:   3'- -CCGGUGGU--UCUUGCG--------------CA--------GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 104846 0.66 0.969489
Target:  5'- uGGCCGgggCAGGAACuuuGCGUgCCUGAGg- -3'
miRNA:   3'- -CCGGUg--GUUCUUG---CGCAgGGACUUgc -5'
28844 3' -54.3 NC_006146.1 + 57853 0.66 0.969489
Target:  5'- aGGCCAacguggaccCCGAGGcCGaCGUCCUgccGGGCGu -3'
miRNA:   3'- -CCGGU---------GGUUCUuGC-GCAGGGa--CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 55368 0.66 0.969489
Target:  5'- cGCCACCGc--GCGCGggacgCCCgGGGCa -3'
miRNA:   3'- cCGGUGGUucuUGCGCa----GGGaCUUGc -5'
28844 3' -54.3 NC_006146.1 + 126396 0.66 0.969489
Target:  5'- -cCCACCAGGGGCcucuGCG-CCCUcuccgcGAACGa -3'
miRNA:   3'- ccGGUGGUUCUUG----CGCaGGGA------CUUGC- -5'
28844 3' -54.3 NC_006146.1 + 10534 0.66 0.969489
Target:  5'- cGGCCuGCCAAGGGCGCugagacgccaGUUCCccgugacaUGGACc -3'
miRNA:   3'- -CCGG-UGGUUCUUGCG----------CAGGG--------ACUUGc -5'
28844 3' -54.3 NC_006146.1 + 103581 0.66 0.969489
Target:  5'- gGGCCuggGCCGGGcucAGCGCGgacguggCCCggGAGCu -3'
miRNA:   3'- -CCGG---UGGUUC---UUGCGCa------GGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 144745 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 130683 0.66 0.96644
Target:  5'- cGGUgcaAUCAGGGGCGCGagaUCUGGGCGg -3'
miRNA:   3'- -CCGg--UGGUUCUUGCGCag-GGACUUGC- -5'
28844 3' -54.3 NC_006146.1 + 126801 0.66 0.96644
Target:  5'- cGG-CGCCGAGcGCGCGgCCCgaggugGAACc -3'
miRNA:   3'- -CCgGUGGUUCuUGCGCaGGGa-----CUUGc -5'
28844 3' -54.3 NC_006146.1 + 126010 0.66 0.96644
Target:  5'- cGGCCGCuCAAGGuaccauCGCGagCCCagGGGCu -3'
miRNA:   3'- -CCGGUG-GUUCUu-----GCGCa-GGGa-CUUGc -5'
28844 3' -54.3 NC_006146.1 + 15988 0.66 0.96644
Target:  5'- cGCCugCGAagggcGGACGCGgucagCCC-GGGCGa -3'
miRNA:   3'- cCGGugGUU-----CUUGCGCa----GGGaCUUGC- -5'
28844 3' -54.3 NC_006146.1 + 147823 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 153979 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5'
28844 3' -54.3 NC_006146.1 + 53487 0.66 0.96644
Target:  5'- cGGUCaggGCCGGGggUGCGgucuggCUCUGGcuGCGg -3'
miRNA:   3'- -CCGG---UGGUUCuuGCGCa-----GGGACU--UGC- -5'
28844 3' -54.3 NC_006146.1 + 157057 0.66 0.96644
Target:  5'- gGGCCGCCGGGGucccuccgGC-CGg-CCUGAugGa -3'
miRNA:   3'- -CCGGUGGUUCU--------UGcGCagGGACUugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.