Results 1 - 20 of 166 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28853 | 5' | -53.8 | NC_006146.1 | + | 114037 | 0.66 | 0.965748 |
Target: 5'- --gGGCgGCCGccagccccAGCcAAAGCUGCCGCc -3' miRNA: 3'- cuaUUG-CGGC--------UCGuUUUCGGCGGCGu -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135883 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135976 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135233 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135512 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 129848 | 0.66 | 0.965748 |
Target: 5'- ---cACcCCGAgGCccccAGGGCCGCCGCGg -3' miRNA: 3'- cuauUGcGGCU-CGu---UUUCGGCGGCGU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135326 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 136255 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 136441 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135790 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135605 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 136627 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 15035 | 0.66 | 0.965748 |
Target: 5'- --gGGCGCCuGGCcAGGGCcCGCCGg- -3' miRNA: 3'- cuaUUGCGGcUCGuUUUCG-GCGGCgu -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 136534 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 136069 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135419 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 136162 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 136348 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135698 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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28853 | 5' | -53.8 | NC_006146.1 | + | 135140 | 0.66 | 0.965748 |
Target: 5'- --gGugGCCGGGCc---GCUGCCGgGu -3' miRNA: 3'- cuaUugCGGCUCGuuuuCGGCGGCgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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