Results 1 - 20 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28857 | 3' | -57.1 | NC_006146.1 | + | 56245 | 0.66 | 0.893755 |
Target: 5'- cGCGGGGGCgGAGGCgg-----GGCCGu -3' miRNA: 3'- -UGCCCUCGaCUCCGacuugcaCUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 44336 | 0.66 | 0.893755 |
Target: 5'- cCGGGGGCUucugcacagGuGGCUGAugGgGACgAg -3' miRNA: 3'- uGCCCUCGA---------CuCCGACUugCaCUGgU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 169649 | 0.66 | 0.893098 |
Target: 5'- gGCGGGgagaauacAGCUG-GGCgUGGcgggcgcGCGUGGCCc -3' miRNA: 3'- -UGCCC--------UCGACuCCG-ACU-------UGCACUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 157581 | 0.66 | 0.88708 |
Target: 5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3' miRNA: 3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 153411 | 0.66 | 0.88708 |
Target: 5'- -aGGGAGUucccgGGGGC-GggUGUGGCUg -3' miRNA: 3'- ugCCCUCGa----CUCCGaCuuGCACUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 61834 | 0.66 | 0.88708 |
Target: 5'- gUGGGGGCagUGGGGCUGGugcCGgGACUc -3' miRNA: 3'- uGCCCUCG--ACUCCGACUu--GCaCUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 138893 | 0.66 | 0.88708 |
Target: 5'- cUGGGAGU--AGGCUGAG-GUGACg- -3' miRNA: 3'- uGCCCUCGacUCCGACUUgCACUGgu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 142191 | 0.66 | 0.88708 |
Target: 5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3' miRNA: 3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 145269 | 0.66 | 0.88708 |
Target: 5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3' miRNA: 3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 148347 | 0.66 | 0.88708 |
Target: 5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3' miRNA: 3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 151425 | 0.66 | 0.88708 |
Target: 5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3' miRNA: 3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 154503 | 0.66 | 0.88708 |
Target: 5'- aACGGG-GCUcaGAGGg-GAGCGgaGACCAg -3' miRNA: 3'- -UGCCCuCGA--CUCCgaCUUGCa-CUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 41219 | 0.66 | 0.880184 |
Target: 5'- cGCGGGcaCUG-GGCgc-GCGUGGCCAg -3' miRNA: 3'- -UGCCCucGACuCCGacuUGCACUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 57063 | 0.66 | 0.880184 |
Target: 5'- gGCGGGAG--GGGGcCUGAcGCGgaUGGCCAa -3' miRNA: 3'- -UGCCCUCgaCUCC-GACU-UGC--ACUGGU- -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 143163 | 0.66 | 0.880184 |
Target: 5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3' miRNA: 3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 146241 | 0.66 | 0.880184 |
Target: 5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3' miRNA: 3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 149319 | 0.66 | 0.880184 |
Target: 5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3' miRNA: 3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 152397 | 0.66 | 0.880184 |
Target: 5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3' miRNA: 3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 155475 | 0.66 | 0.880184 |
Target: 5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3' miRNA: 3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5' |
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28857 | 3' | -57.1 | NC_006146.1 | + | 158554 | 0.66 | 0.880184 |
Target: 5'- cGCGGaGGGcCUGAGGCccagGGGCGagggGACUg -3' miRNA: 3'- -UGCC-CUC-GACUCCGa---CUUGCa---CUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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