Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28861 | 3' | -67.3 | NC_006146.1 | + | 115236 | 0.66 | 0.474324 |
Target: 5'- gCUGGccuucaacgccgccuGGCUcCGGCUGCUGCaccccucggGGGCCc -3' miRNA: 3'- -GACC---------------CCGA-GCCGGCGGCGgca------CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 170684 | 0.66 | 0.470876 |
Target: 5'- -aGGGGCgcccCGGggaCCGUCGCgG-GGGCa -3' miRNA: 3'- gaCCCCGa---GCC---GGCGGCGgCaCCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 109138 | 0.66 | 0.470876 |
Target: 5'- uUGGGcacagaggcCUCGGCCGCUGCCuUGguuucggucccGGCCc -3' miRNA: 3'- gACCCc--------GAGCCGGCGGCGGcAC-----------CCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 54879 | 0.66 | 0.470876 |
Target: 5'- gCUGcGGGCguagCGGgguCCGCucgCGCCGUcuGGCCg -3' miRNA: 3'- -GAC-CCCGa---GCC---GGCG---GCGGCAc-CCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 57040 | 0.66 | 0.470876 |
Target: 5'- -cGGGGCgaaGCCGCCaggguugagGCgGgaggGGGCCu -3' miRNA: 3'- gaCCCCGagcCGGCGG---------CGgCa---CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 50288 | 0.66 | 0.470876 |
Target: 5'- -aGGGGCgcaggagaucugUCaGgCGCCGCC--GGGCCu -3' miRNA: 3'- gaCCCCG------------AGcCgGCGGCGGcaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 13328 | 0.66 | 0.470876 |
Target: 5'- -gGGcGGUggagUCGGCCGCgGCCuacgcgGaGGCCa -3' miRNA: 3'- gaCC-CCG----AGCCGGCGgCGGca----C-CCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 63088 | 0.66 | 0.470876 |
Target: 5'- -cGGGGCUUGGUaCGCaGaaG-GGGCCc -3' miRNA: 3'- gaCCCCGAGCCG-GCGgCggCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 24224 | 0.66 | 0.470876 |
Target: 5'- uUGGGGCcggGGCCGCCcaccgcCCGggaGGGUUg -3' miRNA: 3'- gACCCCGag-CCGGCGGc-----GGCa--CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 39984 | 0.66 | 0.470016 |
Target: 5'- gCUGaGGCUgcugCGGCCcguagugGCCGgUGUGGGCg -3' miRNA: 3'- -GACcCCGA----GCCGG-------CGGCgGCACCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 102328 | 0.66 | 0.465728 |
Target: 5'- -gGGGGCaggcccagaucgaucUCGGCuCGCCaGCgGUccGGGCa -3' miRNA: 3'- gaCCCCG---------------AGCCG-GCGG-CGgCA--CCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 54956 | 0.66 | 0.462312 |
Target: 5'- -cGGGGCgaccGCCGCCGCCGcuaccgcuGCCc -3' miRNA: 3'- gaCCCCGagc-CGGCGGCGGCacc-----CGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 98447 | 0.66 | 0.462312 |
Target: 5'- --cGGuuUCGG-CGCCGCCcggGGGCCa -3' miRNA: 3'- gacCCcgAGCCgGCGGCGGca-CCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 115912 | 0.66 | 0.462312 |
Target: 5'- -gGGGGCUucCGGCCaCC-CCGgguacggGGGCa -3' miRNA: 3'- gaCCCCGA--GCCGGcGGcGGCa------CCCGg -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 142056 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 145134 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 151290 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 154368 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 44087 | 0.66 | 0.45383 |
Target: 5'- aCUGGGGUgguuccaccUCgGGCCGCgCGCUc-GGcGCCg -3' miRNA: 3'- -GACCCCG---------AG-CCGGCG-GCGGcaCC-CGG- -5' |
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28861 | 3' | -67.3 | NC_006146.1 | + | 157446 | 0.66 | 0.45383 |
Target: 5'- uCUGGGGCcaccCGG--GCUGCCG-GGGUCc -3' miRNA: 3'- -GACCCCGa---GCCggCGGCGGCaCCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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