miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28861 5' -59.1 NC_006146.1 + 54045 0.66 0.795102
Target:  5'- cGGG-CCGGAuGUGGUGGAggacgAGAGCg- -3'
miRNA:   3'- aCCCgGGUCUcCAUCGCCU-----UCUCGag -5'
28861 5' -59.1 NC_006146.1 + 170234 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 49891 0.66 0.795102
Target:  5'- gGGGUCCuccgguaggAGAGGUAGuCGGAGGccGC-Cg -3'
miRNA:   3'- aCCCGGG---------UCUCCAUC-GCCUUCu-CGaG- -5'
28861 5' -59.1 NC_006146.1 + 169303 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 71935 0.66 0.795102
Target:  5'- gGuGGCgUUAGGGGUGGUGGAcacugagguGGGGCUg -3'
miRNA:   3'- aC-CCG-GGUCUCCAUCGCCU---------UCUCGAg -5'
28861 5' -59.1 NC_006146.1 + 167439 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 34079 0.66 0.795102
Target:  5'- cGGGgCCGGGGGUccCGGggG-GCa- -3'
miRNA:   3'- aCCCgGGUCUCCAucGCCuuCuCGag -5'
28861 5' -59.1 NC_006146.1 + 90013 0.66 0.795102
Target:  5'- gUGGGUUCgggaAGAGGUgcagggggaAGCGGuGGAGCa- -3'
miRNA:   3'- -ACCCGGG----UCUCCA---------UCGCCuUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 168371 0.66 0.795102
Target:  5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3'
miRNA:   3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5'
28861 5' -59.1 NC_006146.1 + 148298 0.66 0.795102
Target:  5'- aGGaGCuCCAGcAGG-AGCGcGGAGAGC-Ca -3'
miRNA:   3'- aCC-CG-GGUC-UCCaUCGC-CUUCUCGaG- -5'
28861 5' -59.1 NC_006146.1 + 112846 0.66 0.795102
Target:  5'- aGGGCCgAcAGGUAGCcGGcGGAGaCUa -3'
miRNA:   3'- aCCCGGgUcUCCAUCG-CCuUCUC-GAg -5'
28861 5' -59.1 NC_006146.1 + 101852 0.66 0.794211
Target:  5'- cGGGCugccgcaCCAcGGGUGGCGGGGcGAGgaCg -3'
miRNA:   3'- aCCCG-------GGUcUCCAUCGCCUU-CUCgaG- -5'
28861 5' -59.1 NC_006146.1 + 13937 0.66 0.791531
Target:  5'- gUGGGCCCGGGGG-AGCccaGGAcaacuuuaucagcGAGCg- -3'
miRNA:   3'- -ACCCGGGUCUCCaUCG---CCUu------------CUCGag -5'
28861 5' -59.1 NC_006146.1 + 137814 0.66 0.789737
Target:  5'- gGGGUCCGccGGUccggugcaccuggaaGGCaGggGGGCUCg -3'
miRNA:   3'- aCCCGGGUcuCCA---------------UCGcCuuCUCGAG- -5'
28861 5' -59.1 NC_006146.1 + 167861 0.66 0.786132
Target:  5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3'
miRNA:   3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 67908 0.66 0.786132
Target:  5'- cUGGGCCUcGuGGgAGCcGAAGGuGCUCa -3'
miRNA:   3'- -ACCCGGGuCuCCaUCGcCUUCU-CGAG- -5'
28861 5' -59.1 NC_006146.1 + 128260 0.66 0.786132
Target:  5'- cUGGGCCCAcuacguGAGGcccacggcGGCGGccGAGCc- -3'
miRNA:   3'- -ACCCGGGU------CUCCa-------UCGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 166879 0.66 0.786132
Target:  5'- gGGGagCGGAGGgcGaGGAGGAGCg- -3'
miRNA:   3'- aCCCggGUCUCCauCgCCUUCUCGag -5'
28861 5' -59.1 NC_006146.1 + 168793 0.66 0.786132
Target:  5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3'
miRNA:   3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5'
28861 5' -59.1 NC_006146.1 + 169725 0.66 0.786132
Target:  5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3'
miRNA:   3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.