Results 1 - 20 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28861 | 5' | -59.1 | NC_006146.1 | + | 54045 | 0.66 | 0.795102 |
Target: 5'- cGGG-CCGGAuGUGGUGGAggacgAGAGCg- -3' miRNA: 3'- aCCCgGGUCUcCAUCGCCU-----UCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 170234 | 0.66 | 0.795102 |
Target: 5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3' miRNA: 3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 49891 | 0.66 | 0.795102 |
Target: 5'- gGGGUCCuccgguaggAGAGGUAGuCGGAGGccGC-Cg -3' miRNA: 3'- aCCCGGG---------UCUCCAUC-GCCUUCu-CGaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 169303 | 0.66 | 0.795102 |
Target: 5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3' miRNA: 3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 71935 | 0.66 | 0.795102 |
Target: 5'- gGuGGCgUUAGGGGUGGUGGAcacugagguGGGGCUg -3' miRNA: 3'- aC-CCG-GGUCUCCAUCGCCU---------UCUCGAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 167439 | 0.66 | 0.795102 |
Target: 5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3' miRNA: 3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 34079 | 0.66 | 0.795102 |
Target: 5'- cGGGgCCGGGGGUccCGGggG-GCa- -3' miRNA: 3'- aCCCgGGUCUCCAucGCCuuCuCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 90013 | 0.66 | 0.795102 |
Target: 5'- gUGGGUUCgggaAGAGGUgcagggggaAGCGGuGGAGCa- -3' miRNA: 3'- -ACCCGGG----UCUCCA---------UCGCCuUCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 168371 | 0.66 | 0.795102 |
Target: 5'- cGGGgCgGGGGGUcgGGCGGGcauGCUCc -3' miRNA: 3'- aCCCgGgUCUCCA--UCGCCUucuCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 148298 | 0.66 | 0.795102 |
Target: 5'- aGGaGCuCCAGcAGG-AGCGcGGAGAGC-Ca -3' miRNA: 3'- aCC-CG-GGUC-UCCaUCGC-CUUCUCGaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 112846 | 0.66 | 0.795102 |
Target: 5'- aGGGCCgAcAGGUAGCcGGcGGAGaCUa -3' miRNA: 3'- aCCCGGgUcUCCAUCG-CCuUCUC-GAg -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 101852 | 0.66 | 0.794211 |
Target: 5'- cGGGCugccgcaCCAcGGGUGGCGGGGcGAGgaCg -3' miRNA: 3'- aCCCG-------GGUcUCCAUCGCCUU-CUCgaG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 13937 | 0.66 | 0.791531 |
Target: 5'- gUGGGCCCGGGGG-AGCccaGGAcaacuuuaucagcGAGCg- -3' miRNA: 3'- -ACCCGGGUCUCCaUCG---CCUu------------CUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 137814 | 0.66 | 0.789737 |
Target: 5'- gGGGUCCGccGGUccggugcaccuggaaGGCaGggGGGCUCg -3' miRNA: 3'- aCCCGGGUcuCCA---------------UCGcCuuCUCGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 167861 | 0.66 | 0.786132 |
Target: 5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3' miRNA: 3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 67908 | 0.66 | 0.786132 |
Target: 5'- cUGGGCCUcGuGGgAGCcGAAGGuGCUCa -3' miRNA: 3'- -ACCCGGGuCuCCaUCGcCUUCU-CGAG- -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 128260 | 0.66 | 0.786132 |
Target: 5'- cUGGGCCCAcuacguGAGGcccacggcGGCGGccGAGCc- -3' miRNA: 3'- -ACCCGGGU------CUCCa-------UCGCCuuCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 166879 | 0.66 | 0.786132 |
Target: 5'- gGGGagCGGAGGgcGaGGAGGAGCg- -3' miRNA: 3'- aCCCggGUCUCCauCgCCUUCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 168793 | 0.66 | 0.786132 |
Target: 5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3' miRNA: 3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5' |
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28861 | 5' | -59.1 | NC_006146.1 | + | 169725 | 0.66 | 0.786132 |
Target: 5'- gGGcGCUCAGAucGgcGCGGggGAGCc- -3' miRNA: 3'- aCC-CGGGUCUc-CauCGCCuuCUCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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