miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28886 5' -58.3 NC_006146.1 + 137612 0.66 0.828669
Target:  5'- cGGCgGCGCAGCggugcccagccgGGCCACcccccacccGGAGCGg -3'
miRNA:   3'- -CCGgUGCGUUG------------UCGGUGac-------CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 137490 0.66 0.828669
Target:  5'- cGGCgGCGCAGCggugcccaggcgGGCCACcccccacccGGAGCGg -3'
miRNA:   3'- -CCGgUGCGUUG------------UCGGUGac-------CCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 114968 0.66 0.828669
Target:  5'- gGGgCACGCAGCAGCCcAC-GGccGCGg -3'
miRNA:   3'- -CCgGUGCGUUGUCGG-UGaCCcuCGUa -5'
28886 5' -58.3 NC_006146.1 + 111727 0.66 0.828669
Target:  5'- aGGCCACcaCAAagguGGCaCACUGGGuGGCGUc -3'
miRNA:   3'- -CCGGUGc-GUUg---UCG-GUGACCC-UCGUA- -5'
28886 5' -58.3 NC_006146.1 + 147277 0.66 0.828669
Target:  5'- aGGCgACGCAggcuagucuuuAUGGUUACaaacaUGGGAGCGUg -3'
miRNA:   3'- -CCGgUGCGU-----------UGUCGGUG-----ACCCUCGUA- -5'
28886 5' -58.3 NC_006146.1 + 42860 0.66 0.826155
Target:  5'- aGGcCCACGC-GCAGguuCCACUggugggaggcgaagGGGGGCAc -3'
miRNA:   3'- -CC-GGUGCGuUGUC---GGUGA--------------CCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 85886 0.66 0.826155
Target:  5'- gGGCCACGCuggaacuagggugaGAgAGCCGC-GGG-GCu- -3'
miRNA:   3'- -CCGGUGCG--------------UUgUCGGUGaCCCuCGua -5'
28886 5' -58.3 NC_006146.1 + 391 0.66 0.820229
Target:  5'- aGGCCcCGCccGCcGCgCGCUGGGGGUc- -3'
miRNA:   3'- -CCGGuGCGu-UGuCG-GUGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 128169 0.66 0.819376
Target:  5'- aGGCgAUGCAgcgacgccgggagGCGGCCcagGGGGGCGc -3'
miRNA:   3'- -CCGgUGCGU-------------UGUCGGugaCCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 157525 0.66 0.811622
Target:  5'- uGGCCGCGCAGaccacgguGGUCGCggugaGGGAGgAg -3'
miRNA:   3'- -CCGGUGCGUUg-------UCGGUGa----CCCUCgUa -5'
28886 5' -58.3 NC_006146.1 + 53538 0.66 0.811622
Target:  5'- aGGCCGCGagGACcgaggGGCUuCUGGGGGUg- -3'
miRNA:   3'- -CCGGUGCg-UUG-----UCGGuGACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 154659 0.66 0.811622
Target:  5'- aGGCCGgGCA--GGCCGggucuugggcCUGGGAGUc- -3'
miRNA:   3'- -CCGGUgCGUugUCGGU----------GACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 131087 0.66 0.808133
Target:  5'- aGGCCGCcgggccguCAACGGCCGCcgucccagaagccGGGAGCu- -3'
miRNA:   3'- -CCGGUGc-------GUUGUCGGUGa------------CCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 170148 0.66 0.802853
Target:  5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3'
miRNA:   3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 167353 0.66 0.802853
Target:  5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3'
miRNA:   3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 76880 0.66 0.802853
Target:  5'- gGGCCGUGCcccuGCcgGGCCGCacgUGGGAGCc- -3'
miRNA:   3'- -CCGGUGCGu---UG--UCGGUG---ACCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 169217 0.66 0.802853
Target:  5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3'
miRNA:   3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 99374 0.66 0.802853
Target:  5'- gGGCCGCGCGuugaGGCCca--GGAGCGa -3'
miRNA:   3'- -CCGGUGCGUug--UCGGugacCCUCGUa -5'
28886 5' -58.3 NC_006146.1 + 168285 0.66 0.802853
Target:  5'- cGGCUgcacGCGCGGCGGCgCcgGCcGGGGGCu- -3'
miRNA:   3'- -CCGG----UGCGUUGUCG-G--UGaCCCUCGua -5'
28886 5' -58.3 NC_006146.1 + 92087 0.66 0.802853
Target:  5'- cGGCUgccuggACGCGugGGCCuccCaGGGAGUAUu -3'
miRNA:   3'- -CCGG------UGCGUugUCGGu--GaCCCUCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.