miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28888 5' -56.4 NC_006146.1 + 92053 0.65 0.909036
Target:  5'- cUGggGGGCGGGcccgGCCuggggcugcugcuGGGGGGCGGCcCg -3'
miRNA:   3'- -ACa-CCUGUCU----UGGu------------UCCUCCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 49065 0.66 0.905355
Target:  5'- --gGGGCuGGAUCgAAGGAGGgcugaGGCUCc -3'
miRNA:   3'- acaCCUGuCUUGG-UUCCUCCg----CCGAG- -5'
28888 5' -56.4 NC_006146.1 + 162418 0.66 0.905355
Target:  5'- gGUGGGCAcGGGCUAGGGGuGuCaGCUCa -3'
miRNA:   3'- aCACCUGU-CUUGGUUCCUcC-GcCGAG- -5'
28888 5' -56.4 NC_006146.1 + 105643 0.66 0.905355
Target:  5'- cUGUGGuaGCAGGcugagcuguuuuGCCAuuuuauucAGGCGGCUCa -3'
miRNA:   3'- -ACACC--UGUCU------------UGGUucc-----UCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 90203 0.66 0.904734
Target:  5'- --gGGGCAGAgggggaaGagGAGGAGGCGGUg- -3'
miRNA:   3'- acaCCUGUCU-------UggUUCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 56816 0.66 0.899033
Target:  5'- --cGGGCGGGGCUucuGGcccccGAGGCGGcCUCu -3'
miRNA:   3'- acaCCUGUCUUGGu--UC-----CUCCGCC-GAG- -5'
28888 5' -56.4 NC_006146.1 + 153523 0.66 0.899033
Target:  5'- cUGUGGAUGGAGu--GGGGGGCguggGGCUg -3'
miRNA:   3'- -ACACCUGUCUUgguUCCUCCG----CCGAg -5'
28888 5' -56.4 NC_006146.1 + 118220 0.66 0.899033
Target:  5'- ---cGGCAGcGACCAucucGGaGAGGCGGCUg -3'
miRNA:   3'- acacCUGUC-UUGGU----UC-CUCCGCCGAg -5'
28888 5' -56.4 NC_006146.1 + 55257 0.66 0.899033
Target:  5'- --cGGGCGGc-CCGGGcGAaGCGGCUCg -3'
miRNA:   3'- acaCCUGUCuuGGUUC-CUcCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 48585 0.66 0.899033
Target:  5'- -cUGGcACaAGAGCCAGacgauGGGGGUGGCa- -3'
miRNA:   3'- acACC-UG-UCUUGGUU-----CCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 157681 0.66 0.899033
Target:  5'- --aGGGCAGAGCCAGcca-GCGGCUg -3'
miRNA:   3'- acaCCUGUCUUGGUUccucCGCCGAg -5'
28888 5' -56.4 NC_006146.1 + 42278 0.66 0.899033
Target:  5'- -cUGGGCGacACCGGGGAGGCcaGGUa- -3'
miRNA:   3'- acACCUGUcuUGGUUCCUCCG--CCGag -5'
28888 5' -56.4 NC_006146.1 + 160335 0.66 0.899033
Target:  5'- cGUGGGgAG-ACCAcAGGAagguacuugGGCGGgUCa -3'
miRNA:   3'- aCACCUgUCuUGGU-UCCU---------CCGCCgAG- -5'
28888 5' -56.4 NC_006146.1 + 100808 0.66 0.897091
Target:  5'- cGUGGACugcguGGcuuucaucuacuacGCCugugGGGAGGUGGCa- -3'
miRNA:   3'- aCACCUGu----CU--------------UGGu---UCCUCCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 61866 0.66 0.892479
Target:  5'- --gGGGCAGAGguuCCAcGGGGGCGcGCccUCg -3'
miRNA:   3'- acaCCUGUCUU---GGUuCCUCCGC-CG--AG- -5'
28888 5' -56.4 NC_006146.1 + 43632 0.66 0.892479
Target:  5'- aGUGGGCGGcggggcguGGCCGccugGGGAGaggggccCGGCUCg -3'
miRNA:   3'- aCACCUGUC--------UUGGU----UCCUCc------GCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 41414 0.66 0.892479
Target:  5'- cGUaGACGGccgcGCUggGuGGGCGGCUCu -3'
miRNA:   3'- aCAcCUGUCu---UGGuuCcUCCGCCGAG- -5'
28888 5' -56.4 NC_006146.1 + 78003 0.66 0.892479
Target:  5'- -cUGGACAGcACgGGGGGuGGUGGCc- -3'
miRNA:   3'- acACCUGUCuUGgUUCCU-CCGCCGag -5'
28888 5' -56.4 NC_006146.1 + 115684 0.66 0.892479
Target:  5'- --aGGGCGGAGgCA--GAGGCGGC-Cg -3'
miRNA:   3'- acaCCUGUCUUgGUucCUCCGCCGaG- -5'
28888 5' -56.4 NC_006146.1 + 156246 0.66 0.892479
Target:  5'- cGUGGACGGGguGCCGuGGuuGGGCaGCa- -3'
miRNA:   3'- aCACCUGUCU--UGGUuCC--UCCGcCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.