miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28893 3' -47.4 NC_006146.1 + 51134 0.66 0.999831
Target:  5'- -gUGCAGUUgCAgcAGguGACGAAGCGg -3'
miRNA:   3'- ugACGUCAGgGU--UCguUUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 128399 0.66 0.999831
Target:  5'- aGCcGCAGU-CCAGGCA----GAACACg -3'
miRNA:   3'- -UGaCGUCAgGGUUCGUuuguUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 98635 0.66 0.999831
Target:  5'- gACUGCcuucuGGgCCUggGCAAAU--GACACg -3'
miRNA:   3'- -UGACG-----UCaGGGuuCGUUUGuuUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 85944 0.66 0.999831
Target:  5'- cCUGCGGgacuuugCCCccccCAAGCGAGGCGCc -3'
miRNA:   3'- uGACGUCa------GGGuuc-GUUUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 154714 0.66 0.999831
Target:  5'- -aUGCAG-CCCAccagGGCGgccagcAGCAAGACAa -3'
miRNA:   3'- ugACGUCaGGGU----UCGU------UUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 146455 0.66 0.999831
Target:  5'- --gGCGGUCCaCAcacGCGGGCGcAGCACc -3'
miRNA:   3'- ugaCGUCAGG-GUu--CGUUUGUuUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 110203 0.66 0.999826
Target:  5'- -aUGCGGcCCCAuGCAguugcccGugAGGGCACa -3'
miRNA:   3'- ugACGUCaGGGUuCGU-------UugUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 768 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 3563 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 155887 0.66 0.999781
Target:  5'- --cGCcccUCCCuGGCAAACAGGGCAg -3'
miRNA:   3'- ugaCGuc-AGGGuUCGUUUGUUUUGUg -5'
28893 3' -47.4 NC_006146.1 + 151153 0.66 0.999781
Target:  5'- --cGCAGgugCCC-AGCGucAGCAGGAUGCg -3'
miRNA:   3'- ugaCGUCa--GGGuUCGU--UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 104977 0.66 0.999781
Target:  5'- cCUGgGGcUCCCGAGgGGGCucugggGAGACACu -3'
miRNA:   3'- uGACgUC-AGGGUUCgUUUG------UUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 90345 0.66 0.999781
Target:  5'- cCUGCucauuaGGUCUCGGGUAccACGGGACGCu -3'
miRNA:   3'- uGACG------UCAGGGUUCGUu-UGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 1699 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 17612 0.66 0.999781
Target:  5'- cCUGguGcCUgGAGCAGaaaagGCAGAACAUg -3'
miRNA:   3'- uGACguCaGGgUUCGUU-----UGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 2631 0.66 0.999781
Target:  5'- cGCgUGCAG--CCGAGCGugacGACGGGACGCc -3'
miRNA:   3'- -UG-ACGUCagGGUUCGU----UUGUUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 53367 0.66 0.999781
Target:  5'- -aUGCGG-CCCAGGCcccGAGgGAGAgGCg -3'
miRNA:   3'- ugACGUCaGGGUUCG---UUUgUUUUgUG- -5'
28893 3' -47.4 NC_006146.1 + 45450 0.66 0.999776
Target:  5'- aACUGUAGg-UCAGGCAGAUugugccgguauguGAAGCACu -3'
miRNA:   3'- -UGACGUCagGGUUCGUUUG-------------UUUUGUG- -5'
28893 3' -47.4 NC_006146.1 + 148602 0.66 0.99972
Target:  5'- uCUGCAG-CCCAAG-AGGCAcuuuGCAUg -3'
miRNA:   3'- uGACGUCaGGGUUCgUUUGUuu--UGUG- -5'
28893 3' -47.4 NC_006146.1 + 74036 0.66 0.99972
Target:  5'- -aUGCAGUCUCGgcGGCuGACGcgGCAg -3'
miRNA:   3'- ugACGUCAGGGU--UCGuUUGUuuUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.