miRNA display CGI


Results 21 - 40 of 110 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28897 5' -57.8 NC_006146.1 + 117875 0.69 0.634348
Target:  5'- ---cGGCgGCGGCCGcGGCCaGCCGCg -3'
miRNA:   3'- cuucUUGaCGUCGGUaCCGG-CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 115646 0.66 0.835133
Target:  5'- --cGAGCcGCuucGCCcgGGCCGCCcggGCg -3'
miRNA:   3'- cuuCUUGaCGu--CGGuaCCGGCGG---CGa -5'
28897 5' -57.8 NC_006146.1 + 115379 0.75 0.354241
Target:  5'- -cGGAGCUGgaGGCCcUGGCCGCuCGCg -3'
miRNA:   3'- cuUCUUGACg-UCGGuACCGGCG-GCGa -5'
28897 5' -57.8 NC_006146.1 + 114098 0.67 0.773306
Target:  5'- aGAAGccCcGCccGCCAgacGGCCGCCGCg -3'
miRNA:   3'- -CUUCuuGaCGu-CGGUa--CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 113505 0.69 0.685236
Target:  5'- -cAGGAg-GgGGCCAUGGCCGCCa-- -3'
miRNA:   3'- cuUCUUgaCgUCGGUACCGGCGGcga -5'
28897 5' -57.8 NC_006146.1 + 111424 0.67 0.75438
Target:  5'- -cAGGACU-CAGCCGUGGCCaUUGCc -3'
miRNA:   3'- cuUCUUGAcGUCGGUACCGGcGGCGa -5'
28897 5' -57.8 NC_006146.1 + 109294 0.7 0.583404
Target:  5'- gGAGGGAUcucgGCcccGGCCGcGGCCGCUGCa -3'
miRNA:   3'- -CUUCUUGa---CG---UCGGUaCCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 108253 0.68 0.735024
Target:  5'- aGAGGACggacaGCAGgCA-GGCCGCCGg- -3'
miRNA:   3'- cUUCUUGa----CGUCgGUaCCGGCGGCga -5'
28897 5' -57.8 NC_006146.1 + 106023 0.66 0.826789
Target:  5'- -cAGuccaUGCuGGCCGUGGCCGCC-Ca -3'
miRNA:   3'- cuUCuug-ACG-UCGGUACCGGCGGcGa -5'
28897 5' -57.8 NC_006146.1 + 105608 0.66 0.826789
Target:  5'- aGAGGcAGC-GCAGCCA-GGUCcacaGCCGCa -3'
miRNA:   3'- -CUUC-UUGaCGUCGGUaCCGG----CGGCGa -5'
28897 5' -57.8 NC_006146.1 + 103110 0.67 0.79173
Target:  5'- -cGGGGCaG-AGCC-UGGCCGCCGUc -3'
miRNA:   3'- cuUCUUGaCgUCGGuACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 102752 0.67 0.75438
Target:  5'- cGggGAGgagGCAGCCccuuuccugcGUGGCguggCGCCGCUc -3'
miRNA:   3'- -CuuCUUga-CGUCGG----------UACCG----GCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 99084 0.67 0.75438
Target:  5'- uGGAGGGCccGCAGCCA-GGuCCGCaCGUc -3'
miRNA:   3'- -CUUCUUGa-CGUCGGUaCC-GGCG-GCGa -5'
28897 5' -57.8 NC_006146.1 + 98383 0.66 0.825945
Target:  5'- cGAGAGCcGCAGCCGUccgcuccuccgcaGGC-GCUGCa -3'
miRNA:   3'- cUUCUUGaCGUCGGUA-------------CCGgCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 94930 0.69 0.664952
Target:  5'- -cAGAcgaUGCAGgggaCGUGGCCGCUGCg -3'
miRNA:   3'- cuUCUug-ACGUCg---GUACCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 92293 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92263 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92233 0.73 0.438598
Target:  5'- uGggGGGCggGCccGGCCuGUGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGG-UACCGGCGGCGA- -5'
28897 5' -57.8 NC_006146.1 + 92203 0.66 0.826789
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCn -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGa -5'
28897 5' -57.8 NC_006146.1 + 92173 0.7 0.573293
Target:  5'- uGggGGGCggGCccGGCCuggGGCUGCUGCUg -3'
miRNA:   3'- -CuuCUUGa-CG--UCGGua-CCGGCGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.