miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28899 3' -59.4 NC_006146.1 + 55956 0.66 0.815995
Target:  5'- cCCCCgccaucgCCGCCCAGGGguaGCG--GUUGg -3'
miRNA:   3'- aGGGGa------GGUGGGUCUCg--CGCugCAAC- -5'
28899 3' -59.4 NC_006146.1 + 167706 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 169571 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 168639 0.66 0.815995
Target:  5'- uUCCCCgggGCCC-GAGCGCG-CGUc- -3'
miRNA:   3'- -AGGGGaggUGGGuCUCGCGCuGCAac -5'
28899 3' -59.4 NC_006146.1 + 43332 0.66 0.815995
Target:  5'- gCCUCggCCGCCCAGGGCcaGCaGGCGc-- -3'
miRNA:   3'- aGGGGa-GGUGGGUCUCG--CG-CUGCaac -5'
28899 3' -59.4 NC_006146.1 + 108511 0.66 0.813472
Target:  5'- gUCCUCUUCcucgcgagcugaacGgCCAGgggccucuccGGCGCGGCGUUGg -3'
miRNA:   3'- -AGGGGAGG--------------UgGGUC----------UCGCGCUGCAAC- -5'
28899 3' -59.4 NC_006146.1 + 32405 0.66 0.807531
Target:  5'- aCCUagCUCCACCCaccuggaauauAGGG-GCGGCGUUa -3'
miRNA:   3'- aGGG--GAGGUGGG-----------UCUCgCGCUGCAAc -5'
28899 3' -59.4 NC_006146.1 + 168962 0.66 0.798918
Target:  5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 169830 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 168898 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 168030 0.66 0.798918
Target:  5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 170761 0.66 0.798918
Target:  5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 170889 0.66 0.798918
Target:  5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 169894 0.66 0.798918
Target:  5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 168930 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 167998 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 169862 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 167966 0.66 0.798918
Target:  5'- gCCCCUCuccuaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5'
28899 3' -59.4 NC_006146.1 + 51821 0.66 0.798918
Target:  5'- aCCCgUUC-CCCGGGGCgGCGugGa-- -3'
miRNA:   3'- aGGGgAGGuGGGUCUCG-CGCugCaac -5'
28899 3' -59.4 NC_006146.1 + 170793 0.66 0.798918
Target:  5'- gCCCCUCuccgaaauCACCCuu-GCGUGACGa-- -3'
miRNA:   3'- aGGGGAG--------GUGGGucuCGCGCUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.