miRNA display CGI


Results 1 - 20 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28917 5' -58.4 NC_006146.1 + 51569 0.66 0.841837
Target:  5'- cCCUgGGCGccGCCGGGaGGGGCCcGGGg- -3'
miRNA:   3'- aGGA-CUGC--CGGUUC-CUCCGGuUCCac -5'
28917 5' -58.4 NC_006146.1 + 167376 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 170171 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 169240 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 168308 0.66 0.841837
Target:  5'- gCC-GGgGGCUGAGGGGGCUcccGAGGg- -3'
miRNA:   3'- aGGaCUgCCGGUUCCUCCGG---UUCCac -5'
28917 5' -58.4 NC_006146.1 + 39949 0.66 0.841837
Target:  5'- cUCCUGAcccugaugacaCGGCUggGGAaggagaGGCUGAGGcUGc -3'
miRNA:   3'- -AGGACU-----------GCCGGuuCCU------CCGGUUCC-AC- -5'
28917 5' -58.4 NC_006146.1 + 72143 0.66 0.834586
Target:  5'- uUCCUGAaaggcgugcaagauGCgGAGGAGGCCGAGa-- -3'
miRNA:   3'- -AGGACUgc------------CGgUUCCUCCGGUUCcac -5'
28917 5' -58.4 NC_006146.1 + 72268 0.66 0.833771
Target:  5'- -gCUGAUGGCCAucuuucAGGGGGaUCucuacguGGGUGg -3'
miRNA:   3'- agGACUGCCGGU------UCCUCC-GGu------UCCAC- -5'
28917 5' -58.4 NC_006146.1 + 127067 0.66 0.825529
Target:  5'- -gCUGGCGGCgcGGGAagccgaaagGGCCAGGGc- -3'
miRNA:   3'- agGACUGCCGguUCCU---------CCGGUUCCac -5'
28917 5' -58.4 NC_006146.1 + 4979 0.66 0.825529
Target:  5'- cUCCUGGCGGCCucacuaacgcGGGGuGCCugugucagcGGGUa -3'
miRNA:   3'- -AGGACUGCCGGuu--------CCUC-CGGu--------UCCAc -5'
28917 5' -58.4 NC_006146.1 + 4415 0.66 0.825529
Target:  5'- uUCCgGACGGUCcAGG-GGCU--GGUGa -3'
miRNA:   3'- -AGGaCUGCCGGuUCCuCCGGuuCCAC- -5'
28917 5' -58.4 NC_006146.1 + 158562 0.66 0.825528
Target:  5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3'
miRNA:   3'- aGGACUgCCGGuUCCuCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 51199 0.66 0.825528
Target:  5'- -gCUGGCguGGUaCAGGGcauccacgAGGCCGGGGUGg -3'
miRNA:   3'- agGACUG--CCG-GUUCC--------UCCGGUUCCAC- -5'
28917 5' -58.4 NC_006146.1 + 155483 0.66 0.825528
Target:  5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3'
miRNA:   3'- aGGACUgCCGGuUCCuCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 143171 0.66 0.825528
Target:  5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3'
miRNA:   3'- aGGACUgCCGGuUCCuCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 146249 0.66 0.825528
Target:  5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3'
miRNA:   3'- aGGACUgCCGGuUCCuCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 149327 0.66 0.825528
Target:  5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3'
miRNA:   3'- aGGACUgCCGGuUCCuCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 152405 0.66 0.825528
Target:  5'- gCCUGA-GGCCcAGG-GGCgAGGGg- -3'
miRNA:   3'- aGGACUgCCGGuUCCuCCGgUUCCac -5'
28917 5' -58.4 NC_006146.1 + 62836 0.66 0.817116
Target:  5'- cCCUGGCcGCCGuGGccAGGCCgGAGGUu -3'
miRNA:   3'- aGGACUGcCGGUuCC--UCCGG-UUCCAc -5'
28917 5' -58.4 NC_006146.1 + 44941 0.66 0.817116
Target:  5'- cUCgUGGCcaggGGCgCGGGGAGGCCccGGGGg- -3'
miRNA:   3'- -AGgACUG----CCG-GUUCCUCCGG--UUCCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.