miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28922 3' -63.8 NC_006146.1 + 51895 0.65 0.602359
Target:  5'- gGUGGAgGCUgcgucGGCGgggGCCuccgaggcaccgacGGGCGGCCc -3'
miRNA:   3'- gCGCCU-CGA-----CCGUa--CGG--------------UCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 54827 0.66 0.599458
Target:  5'- gGCGGAggGCgGGCcaaaucuggaacucgAUGa-AGGCGGCCGg -3'
miRNA:   3'- gCGCCU--CGaCCG---------------UACggUCCGCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 39792 0.66 0.599458
Target:  5'- -cCGGAGCUcccggcuucugggacGGCGgccguugacgGCCcGGCGGCCu -3'
miRNA:   3'- gcGCCUCGA---------------CCGUa---------CGGuCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 110419 0.66 0.596558
Target:  5'- gGgGGAGCUGGCcccccgGCCucucaccgcuccccGCGGCCu -3'
miRNA:   3'- gCgCCUCGACCGua----CGGuc------------CGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 56349 0.66 0.595592
Target:  5'- cCGCccGGAGCaGGUAguagGCguGGUGGCgGa -3'
miRNA:   3'- -GCG--CCUCGaCCGUa---CGguCCGCCGgC- -5'
28922 3' -63.8 NC_006146.1 + 2476 0.66 0.595592
Target:  5'- gGCGGuguGGCcGGCGggGgCAGGCagcuGGCCGa -3'
miRNA:   3'- gCGCC---UCGaCCGUa-CgGUCCG----CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 127243 0.66 0.595592
Target:  5'- aGCGaaugcGAGCcgGGCcccucuccCCAGGCGGCCa -3'
miRNA:   3'- gCGC-----CUCGa-CCGuac-----GGUCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 59425 0.66 0.595592
Target:  5'- --aGGAGCaaGUAUGCCGGGgGGUgGu -3'
miRNA:   3'- gcgCCUCGacCGUACGGUCCgCCGgC- -5'
28922 3' -63.8 NC_006146.1 + 53205 0.66 0.595592
Target:  5'- uGgGGGGC-GGCGUGCCAaacuccGCgGGCCu -3'
miRNA:   3'- gCgCCUCGaCCGUACGGUc-----CG-CCGGc -5'
28922 3' -63.8 NC_006146.1 + 92059 0.66 0.595592
Target:  5'- gGCGGgcccGGCcuggGGCugcUGCUgggGGGCGGCCc -3'
miRNA:   3'- gCGCC----UCGa---CCGu--ACGG---UCCGCCGGc -5'
28922 3' -63.8 NC_006146.1 + 108551 0.66 0.595592
Target:  5'- gCGCGGcGUUGGagugGCUGGGCuuGGCUGg -3'
miRNA:   3'- -GCGCCuCGACCgua-CGGUCCG--CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 139122 0.66 0.595592
Target:  5'- -cCGGAGCUGGCuccgaugGCgCAGGUGGg-- -3'
miRNA:   3'- gcGCCUCGACCGua-----CG-GUCCGCCggc -5'
28922 3' -63.8 NC_006146.1 + 130287 0.66 0.594627
Target:  5'- aCGCGGgagaagcAGCggcGGCAUGCgGaGGUucGGCCGc -3'
miRNA:   3'- -GCGCC-------UCGa--CCGUACGgU-CCG--CCGGC- -5'
28922 3' -63.8 NC_006146.1 + 169224 0.66 0.585948
Target:  5'- aCGCGcGGCgGcGCcgGCCGGG-GGCUGa -3'
miRNA:   3'- -GCGCcUCGaC-CGuaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 155572 0.66 0.585948
Target:  5'- gCGCGGGGCgcccgccaggGGCAcaCCGGGgcUGGCCu -3'
miRNA:   3'- -GCGCCUCGa---------CCGUacGGUCC--GCCGGc -5'
28922 3' -63.8 NC_006146.1 + 168292 0.66 0.585948
Target:  5'- aCGCGcGGCgGcGCcgGCCGGG-GGCUGa -3'
miRNA:   3'- -GCGCcUCGaC-CGuaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 168716 0.66 0.585948
Target:  5'- gGCGGggagaaugacAGCUGgGCGUGgCGGGCGcGCg- -3'
miRNA:   3'- gCGCC----------UCGAC-CGUACgGUCCGC-CGgc -5'
28922 3' -63.8 NC_006146.1 + 167360 0.66 0.585948
Target:  5'- aCGCGcGGCgGcGCcgGCCGGG-GGCUGa -3'
miRNA:   3'- -GCGCcUCGaC-CGuaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 170155 0.66 0.585948
Target:  5'- aCGCGcGGCgGcGCcgGCCGGG-GGCUGa -3'
miRNA:   3'- -GCGCcUCGaC-CGuaCGGUCCgCCGGC- -5'
28922 3' -63.8 NC_006146.1 + 167784 0.66 0.585948
Target:  5'- gGCGGggagaaugacAGCUGgGCGUGgCGGGCGcGCg- -3'
miRNA:   3'- gCGCC----------UCGAC-CGUACgGUCCGC-CGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.