miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28925 5' -51 NC_006146.1 + 115699 0.66 0.99553
Target:  5'- gCGGCCGacaGGAGAc--GCUcgcCCGCCGCg -3'
miRNA:   3'- -GUUGGCg--CCUUUuucUGAa--GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 107483 0.66 0.99553
Target:  5'- uGGCCGCGcu--GAGGg--CCGCCACu -3'
miRNA:   3'- gUUGGCGCcuuuUUCUgaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 110568 0.66 0.99553
Target:  5'- -cACCGCaGAGu-AGACacUCGCCACg -3'
miRNA:   3'- guUGGCGcCUUuuUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 54495 0.66 0.99553
Target:  5'- --gUCGUGGGAGGAGACU-CC-CCAg -3'
miRNA:   3'- guuGGCGCCUUUUUCUGAaGGcGGUg -5'
28925 5' -51 NC_006146.1 + 127180 0.66 0.99553
Target:  5'- uGGCC-CGGGcGGAGGAaaUCCGCCAg -3'
miRNA:   3'- gUUGGcGCCU-UUUUCUgaAGGCGGUg -5'
28925 5' -51 NC_006146.1 + 56333 0.66 0.99553
Target:  5'- -cGCCGCGaGAAGGAGg---CCGCC-Cg -3'
miRNA:   3'- guUGGCGC-CUUUUUCugaaGGCGGuG- -5'
28925 5' -51 NC_006146.1 + 55177 0.66 0.994791
Target:  5'- uGACCGCGuccc-AGGCUgcggCCGCgGCg -3'
miRNA:   3'- gUUGGCGCcuuuuUCUGAa---GGCGgUG- -5'
28925 5' -51 NC_006146.1 + 97845 0.66 0.994791
Target:  5'- aCGACC-UGGAGGAGGGgg-CCGCCGa -3'
miRNA:   3'- -GUUGGcGCCUUUUUCUgaaGGCGGUg -5'
28925 5' -51 NC_006146.1 + 2012 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2945 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 1048 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 1080 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 2913 0.66 0.994791
Target:  5'- uGAUUuaGGAGAGGGGCUUC-GUCACg -3'
miRNA:   3'- gUUGGcgCCUUUUUCUGAAGgCGGUG- -5'
28925 5' -51 NC_006146.1 + 159233 0.66 0.994303
Target:  5'- -uACCGUGGggGGccAGGCUggcaUuauaucggugcaacgCCGCCACg -3'
miRNA:   3'- guUGGCGCCuuUU--UCUGA----A---------------GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 104388 0.66 0.993957
Target:  5'- gCggUCGUGGAGGGAGGCcgugccaaaaUCCGUCAg -3'
miRNA:   3'- -GuuGGCGCCUUUUUCUGa---------AGGCGGUg -5'
28925 5' -51 NC_006146.1 + 169791 0.66 0.993957
Target:  5'- uGACUGUGGAAGAaacaaauaguuAGGCUUCUGUa-- -3'
miRNA:   3'- gUUGGCGCCUUUU-----------UCUGAAGGCGgug -5'
28925 5' -51 NC_006146.1 + 36089 0.66 0.993957
Target:  5'- aCAACCGCaaGGAGAcuagaaggGGGAC--CCGCUGCu -3'
miRNA:   3'- -GUUGGCG--CCUUU--------UUCUGaaGGCGGUG- -5'
28925 5' -51 NC_006146.1 + 127387 0.66 0.993957
Target:  5'- --cUCGUGGAGGugucuuGGGGCUgggccCCGCCGCc -3'
miRNA:   3'- guuGGCGCCUUU------UUCUGAa----GGCGGUG- -5'
28925 5' -51 NC_006146.1 + 55424 0.66 0.993018
Target:  5'- -cGCCGCGGccucguuGAGAC--CCGCCGa -3'
miRNA:   3'- guUGGCGCCuuu----UUCUGaaGGCGGUg -5'
28925 5' -51 NC_006146.1 + 14814 0.66 0.993018
Target:  5'- cCGGCCGggcCGGAGGAGGGCacggUCUcgggcccgggGCCGCg -3'
miRNA:   3'- -GUUGGC---GCCUUUUUCUGa---AGG----------CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.