miRNA display CGI


Results 1 - 20 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28928 3' -54 NC_006146.1 + 128868 0.66 0.972478
Target:  5'- -aGGGCCACGAAgagggggcggaggcgGgCCCGAacGCGGg -3'
miRNA:   3'- ugCCCGGUGUUU---------------UgGGGCUguUGUCg -5'
28928 3' -54 NC_006146.1 + 127740 0.66 0.972478
Target:  5'- cUGGGCCGgAGAGCCuggagaagauuaucgCCGACcuCAGg -3'
miRNA:   3'- uGCCCGGUgUUUUGG---------------GGCUGuuGUCg -5'
28928 3' -54 NC_006146.1 + 49423 0.66 0.971356
Target:  5'- gGCGGcccCCACGAuggaCCCGGCGuuGGCg -3'
miRNA:   3'- -UGCCc--GGUGUUuug-GGGCUGUugUCG- -5'
28928 3' -54 NC_006146.1 + 72583 0.66 0.971356
Target:  5'- -gGGGCUugccgggguUAGAACCCCGGCAcucGCa -3'
miRNA:   3'- ugCCCGGu--------GUUUUGGGGCUGUuguCG- -5'
28928 3' -54 NC_006146.1 + 77935 0.66 0.971356
Target:  5'- gGCGGGaCagGCAGAGCa--GAUAGCAGCc -3'
miRNA:   3'- -UGCCC-Gg-UGUUUUGgggCUGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 21712 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 12477 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 15556 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 18634 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 24790 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 27868 0.66 0.971356
Target:  5'- uCGGGCCcCucuGGACUCCGGCuuccccauccCAGCc -3'
miRNA:   3'- uGCCCGGuGu--UUUGGGGCUGuu--------GUCG- -5'
28928 3' -54 NC_006146.1 + 109296 0.66 0.971356
Target:  5'- -aGGGau-CucGGCCCCGGCcGCGGCc -3'
miRNA:   3'- ugCCCgguGuuUUGGGGCUGuUGUCG- -5'
28928 3' -54 NC_006146.1 + 54668 0.66 0.971356
Target:  5'- aGCuGGCC-CcGAAUCCCGcCGACAaGCg -3'
miRNA:   3'- -UGcCCGGuGuUUUGGGGCuGUUGU-CG- -5'
28928 3' -54 NC_006146.1 + 168354 0.66 0.971356
Target:  5'- gUGGGCUgaaGAAccagguGCCCCGaguaggugucucGCAGCGGCg -3'
miRNA:   3'- uGCCCGGug-UUU------UGGGGC------------UGUUGUCG- -5'
28928 3' -54 NC_006146.1 + 8007 0.66 0.971356
Target:  5'- gGCGcGCgGCAGGACUgCGAgGACuGCa -3'
miRNA:   3'- -UGCcCGgUGUUUUGGgGCUgUUGuCG- -5'
28928 3' -54 NC_006146.1 + 49081 0.66 0.971356
Target:  5'- -aGGGCU--GAGGCUCCGGCuguggcucaGGCGGCu -3'
miRNA:   3'- ugCCCGGugUUUUGGGGCUG---------UUGUCG- -5'
28928 3' -54 NC_006146.1 + 108976 0.66 0.971356
Target:  5'- -aGGGCCcUGGAGCCCCuGAUGGCccGCc -3'
miRNA:   3'- ugCCCGGuGUUUUGGGG-CUGUUGu-CG- -5'
28928 3' -54 NC_006146.1 + 168530 0.66 0.971356
Target:  5'- cCGGGCCuccccugGGGGCCUCGGgGGCGGa -3'
miRNA:   3'- uGCCCGGug-----UUUUGGGGCUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 167598 0.66 0.971356
Target:  5'- cCGGGCCuccccugGGGGCCUCGGgGGCGGa -3'
miRNA:   3'- uGCCCGGug-----UUUUGGGGCUgUUGUCg -5'
28928 3' -54 NC_006146.1 + 169462 0.66 0.971356
Target:  5'- cCGGGCCuccccugGGGGCCUCGGgGGCGGa -3'
miRNA:   3'- uGCCCGGug-----UUUUGGGGCUgUUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.